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IMGVR_UViG_3300000153_000230-3300000153-SI39nov09_135mDRAFT_100284810
Arc-VirIMGVR_UViG_3300000153_000230-3300000153-SI39nov09_135mDRAFT_100284810
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 47-159
Domain cluster:
rep: MW805361.1__URC15191.1__GD1_67__00067__D3-144
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ep4A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 40.0 | 3.57e-01 | 77.0% | 60.2% |
| 4xrtA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 34.0 | 3.13e-01 | 72.6% | 50.0% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.53 | 40.0 | 3.07e-01 | 79.6% | 45.2% |
| 4h5bA00 | 3.30.1460.70 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 45.0 | 4.18e-01 | 100.0% | 84.2% |
| 4ytlA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 23.0 | 3.19e-01 | 71.7% | 94.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4944155 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.64 | 45.0 | 4.01e-01 | 71.7% | 53.5% |
| 3930706 | 73.1.1.0 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain | 0.61 | 32.0 | 3.69e-01 | 77.9% | 68.2% |
| 3110784 | 4056.1.1.4 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con | 0.59 | 37.0 | 3.64e-01 | 75.2% | 59.2% |
| 2468374 | 327.16.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin | 0.59 | 43.0 | 3.16e-01 | 76.1% | 42.5% |
| 3627952 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.57 | 51.0 | 4.16e-01 | 100.0% | 65.2% |
| 3222747 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.57 | 31.0 | 3.31e-01 | 85.0% | 61.0% |
| 3936017 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.54 | 43.0 | 4.35e-01 | 87.6% | 85.5% |
| 4586825 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.53 | 41.0 | 3.03e-01 | 83.2% | 45.6% |
| 4488223 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.53 | 41.0 | 3.00e-01 | 83.2% | 54.5% |
| 3787279 | 633.23.1.9 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 | 0.52 | 44.0 | 3.37e-01 | 94.7% | 79.3% |
| 3607858 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 36.0 | 3.77e-01 | 91.2% | 78.1% |
| 3504606 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.51 | 40.0 | 3.00e-01 | 83.2% | 47.9% |
| 3885687 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.51 | 41.0 | 3.10e-01 | 85.8% | 52.6% |
| 3888419 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.51 | 40.0 | 3.06e-01 | 85.8% | 44.4% |
| 3185712 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 40.0 | 3.91e-01 | 84.1% | 87.2% |