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IMGVR_UViG_3300000153_000259-3300000153-SI39nov09_135mDRAFT_10004619

Arc-Vir

IMGVR_UViG_3300000153_000259-3300000153-SI39nov09_135mDRAFT_10004619

Quality

90.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-241
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13640.13 best 2OG-FeII_Oxy_3 45.4 1.80e-11 47.5% 96.9%
PF13661.13 2OG-FeII_Oxy_4 28.8 1.90e-06 46.7% 81.6%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4j25F00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.85 64.0 7.27e-01 89.6% 98.4%
3kt7A01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.81 74.0 7.39e-01 94.2% 93.5%
4nhxA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.80 70.0 7.34e-01 93.8% 97.3%
2g19A00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.80 68.0 7.15e-01 94.2% 96.8%
5ep9D00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.77 66.0 6.61e-01 95.0% 87.6%
3itqA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.77 58.0 6.58e-01 89.6% 100.0%
3kt4A02 3.60.130.20 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Oxoglutarate/iron-dependent oxygenase, C-terminal degradation domain 0.74 64.0 5.80e-01 90.4% 81.6%
2vecA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 35.0 4.90e-01 77.9% 88.7%
4naoA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.72 62.0 5.82e-01 91.3% 75.2%
5zm4B00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.72 63.0 5.90e-01 91.3% 88.4%
4y5tB00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.71 63.0 5.88e-01 91.3% 87.4%
2jigA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.71 59.0 6.40e-01 89.2% 100.0%
5dawA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.71 62.0 5.82e-01 91.3% 76.0%
4xcbD00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.70 66.0 6.49e-01 98.3% 100.0%
2fd8A01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.69 55.0 6.05e-01 86.7% 100.0%
3on7B00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.68 63.0 5.98e-01 98.3% 97.5%
5c3pD00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.67 62.0 5.72e-01 97.5% 93.4%
1xe7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 39.0 4.49e-01 82.1% 76.3%
1w9yA00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.66 60.0 5.54e-01 95.4% 92.3%
2qqkA02 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.63 31.0 4.37e-01 71.2% 97.4%
2rdqA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.63 59.0 5.69e-01 100.0% 96.2%
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 32.0 4.24e-01 75.4% 91.2%
3kq4B02 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.62 32.0 4.39e-01 70.0% 98.3%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 36.0 4.30e-01 71.7% 87.0%
6a48A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 35.0 4.42e-01 72.1% 96.5%
3t30C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.59 25.0 3.79e-01 77.1% 94.7%
2e26A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 35.0 4.27e-01 74.6% 92.3%
7lyuB02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 36.0 4.33e-01 74.2% 93.7%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 34.0 4.19e-01 72.5% 91.0%
4gwmA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 34.0 4.06e-01 70.4% 86.6%
2dduA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 35.0 4.20e-01 73.3% 93.5%
4ylmX00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.56 50.0 4.81e-01 94.6% 96.4%
4oj8B00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.56 48.0 4.59e-01 89.6% 99.3%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 31.0 3.80e-01 70.8% 91.0%
1gnyA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 32.0 3.93e-01 73.8% 92.2%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.53 37.0 4.15e-01 90.8% 90.5%
4ei0A01 2.60.40.3550 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 0.53 28.0 3.51e-01 71.2% 83.7%
4pqqA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 33.0 3.92e-01 75.4% 94.2%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.52 22.0 3.03e-01 84.2% 75.8%
1jhjA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 34.0 4.00e-01 82.5% 97.5%
1cx1A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 32.0 3.89e-01 88.7% 96.1%
3ptyA02 2.60.120.940 Mainly Beta › Sandwich › Jelly Rolls › EmbC, C-terminal domain, subdomain 2 0.51 35.0 3.95e-01 71.2% 91.6%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.51 26.0 3.46e-01 83.3% 95.7%
2e26A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 37.0 3.92e-01 73.8% 89.0%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4087536 10.12.1.54 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_4 0.83 73.0 7.55e-01 93.8% 95.6%
3226511 10.12.1.54 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_4 0.82 71.0 7.28e-01 96.7% 92.3%
2393233 10.12.1.53 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.81 67.0 6.99e-01 94.2% 92.7%
1411393 10.12.1.54 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_4 0.80 70.0 7.29e-01 93.8% 96.5%
3391336 10.12.1.54 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_4 0.79 72.0 7.32e-01 94.6% 95.3%
4406146 10.12.1.53 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.79 64.0 6.94e-01 86.7% 98.0%
None 0.78 62.0 6.74e-01 90.8% 95.6%
3289882 10.12.1.54 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_4 0.77 71.0 6.92e-01 95.0% 94.1%
3771849 10.12.1.131 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ofd1_CTDD, 2OG-FeII_Oxy_4 0.76 73.0 5.59e-01 99.2% 88.0%
3253806 10.12.1.53 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.76 60.0 6.41e-01 90.0% 92.4%
3270307 10.12.1.53 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.76 66.0 6.58e-01 89.2% 92.2%
3592362 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.74 69.0 6.24e-01 97.9% 88.3%
3694503 10.12.1.44 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ofd1_CTDD 0.74 65.0 5.98e-01 91.3% 73.9%
3927787 10.12.1.53 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.73 68.0 6.41e-01 97.1% 83.2%
3450541 10.12.1.53 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.73 62.0 6.18e-01 89.6% 85.3%
3250229 10.12.1.53 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.72 67.0 6.36e-01 98.3% 87.5%
3265332 10.12.1.53 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.71 63.0 6.17e-01 91.7% 96.5%
3420147 10.12.1.17 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N 0.71 65.0 5.49e-01 96.7% 82.3%
2794595 10.12.1.25 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PhyH 0.71 62.0 5.78e-01 91.3% 84.4%
3945657 10.12.1.17 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N 0.71 66.0 5.87e-01 97.9% 89.2%
3731418 10.12.1.17 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N 0.70 65.0 5.79e-01 97.5% 97.6%
3460039 10.12.1.16 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy 0.70 66.0 5.60e-01 99.6% 96.3%
3886861 10.12.1.17 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N 0.70 66.0 5.93e-01 100.0% 97.2%
4167113 10.12.1.17 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N 0.70 65.0 5.75e-01 99.2% 93.8%
3813345 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.69 55.0 5.78e-01 90.8% 89.5%
3290986 10.12.1.17 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N 0.69 64.0 5.63e-01 98.3% 92.5%
4428166 10.12.1.25 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PhyH 0.65 61.0 5.80e-01 100.0% 96.1%
3255298 10.12.1.52 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 0.64 57.0 5.03e-01 93.8% 89.6%
3967057 10.12.1.107 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF27522 0.62 53.0 5.13e-01 88.7% 84.2%
3807364 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.61 41.0 4.25e-01 83.3% 70.4%
3695392 10.12.1.107 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF27522 0.61 52.0 5.01e-01 88.7% 82.9%
3722047 10.12.1.107 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF27522 0.60 52.0 4.85e-01 90.8% 84.7%
1176686 10.32.1.77 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Reelin_subrepeat-B 0.60 35.0 4.28e-01 71.2% 90.5%
2559846 10.32.1.77 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Reelin_subrepeat-B 0.59 36.0 4.37e-01 75.4% 92.9%
5040308 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 35.0 4.09e-01 72.5% 86.1%
5061835 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 35.0 4.23e-01 75.0% 92.9%
3194674 10.2.1.72 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PNGaseA 0.57 34.0 4.22e-01 89.2% 94.0%
2559844 10.32.1.77 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Reelin_subrepeat-B 0.56 35.0 4.34e-01 89.6% 100.0%
3289350 10.12.1.12 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD 0.56 48.0 4.66e-01 89.2% 100.0%
4102071 10.32.1.8 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.56 34.0 4.14e-01 73.8% 94.7%
5039884 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 36.0 4.14e-01 73.8% 89.9%
4932769 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 28.0 3.72e-01 71.2% 95.8%
1147 10.32.1.15 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_15 0.53 32.0 3.93e-01 73.8% 92.2%
4567712 10.32.1.48 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_26 0.53 29.0 3.85e-01 89.6% 98.4%
3775072 10.32.1.209 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MGAT4A_C 0.52 32.0 3.85e-01 72.9% 92.2%
3948941 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 33.0 4.03e-01 89.6% 97.4%
3801529 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 34.0 3.92e-01 74.2% 89.1%
3989895 10.32.1.86 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C_2 0.52 30.0 3.74e-01 74.6% 90.0%
5039775 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 37.0 4.06e-01 71.7% 91.8%
4615943 10.32.1.173 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Muskelin_N 0.52 33.0 3.81e-01 75.8% 85.7%
3828980 10.32.1.241 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › SAC9_GBDL_2nd 0.52 38.0 4.10e-01 75.4% 99.5%
1141 10.32.1.8 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.51 32.0 3.89e-01 88.7% 96.1%
3260805 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 36.0 4.00e-01 71.7% 92.8%
3741536 10.32.1.173 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Muskelin_N 0.50 33.0 3.88e-01 75.0% 94.5%