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IMGVR_UViG_3300000154_000022-3300000154-SI47jul10_150mDRAFT_100054511
Arc-VirIMGVR_UViG_3300000154_000022-3300000154-SI47jul10_150mDRAFT_100054511
Identity
- Kingdom:
- archaea
Quality
88.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 154-235
Domain cluster:
rep: IMGVR_UViG_3300031857_004037-3300031857-Ga0315909_100099191__D152-231_272-308
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gw6F01 | 4.10.1090.10 | Few Secondary Structures › Irregular › Endosialidase, domain 4 › Endosialidase, domain 4 | 0.70 | 49.0 | 4.69e-01 | 81.7% | 63.4% |
| 2p8eA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.59 | 50.0 | 3.46e-01 | 93.9% | 72.7% |
| 3ju4A04 | 4.10.1090.10 | Few Secondary Structures › Irregular › Endosialidase, domain 4 › Endosialidase, domain 4 | 0.57 | 50.0 | 4.16e-01 | 100.0% | 60.4% |
| 2v43A01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.56 | 40.0 | 3.09e-01 | 92.7% | 33.3% |
| 3mi6B03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.56 | 39.0 | 3.61e-01 | 73.2% | 99.0% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.55 | 37.0 | 3.81e-01 | 82.9% | 72.5% |
| 1d3bB00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 38.0 | 3.83e-01 | 74.4% | 75.3% |
| 5kkuD00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.52 | 40.0 | 2.78e-01 | 82.9% | 45.4% |
| 3d7rA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 45.0 | 3.07e-01 | 95.1% | 66.6% |
| 6serA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 44.0 | 3.20e-01 | 93.9% | 45.6% |
| 5cfvA01 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.51 | 40.0 | 3.67e-01 | 92.7% | 64.5% |
| 4jglA00 | 2.40.128.530 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 36.0 | 2.97e-01 | 76.8% | 40.8% |
| 2ciuA00 | 3.10.450.320 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 | 0.50 | 41.0 | 3.61e-01 | 90.2% | 67.5% |
| 4q05A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 42.0 | 2.90e-01 | 96.3% | 63.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4142339 | 4099.1.1.4 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O | 0.52 | 41.0 | 3.46e-01 | 85.4% | 63.6% |
| 3222275 | 246.2.1.5 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos,ASMase_C | 0.52 | 43.0 | 2.81e-01 | 100.0% | 69.3% |
| 3471871 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 36.0 | 3.10e-01 | 70.7% | 69.1% |
| 3229613 | 12.1.1.31 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_59M | 0.52 | 35.0 | 3.27e-01 | 70.7% | 100.0% |
| 3597028 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 34.0 | 3.74e-01 | 70.7% | 90.8% |
| 3990414 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.50 | 41.0 | 3.42e-01 | 87.8% | 58.6% |
D2
high
residues 241-293
Domain cluster:
representative
CATH (64)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.94 | 82.0 | 7.54e-01 | 100.0% | 74.6% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.91 | 72.0 | 7.58e-01 | 83.0% | 100.0% |
| 3fd9A03 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.91 | 84.0 | 7.47e-01 | 100.0% | 76.7% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.91 | 75.0 | 6.15e-01 | 100.0% | 51.6% |
| 4b6xA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.90 | 79.0 | 7.17e-01 | 100.0% | 72.5% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.89 | 84.0 | 7.25e-01 | 100.0% | 80.3% |
| 2p5tA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.88 | 81.0 | 6.55e-01 | 98.1% | 67.4% |
| 3pyoY00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.86 | 71.0 | 6.70e-01 | 86.8% | 79.0% |
| 3b2eF00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.86 | 76.0 | 7.16e-01 | 100.0% | 80.6% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.86 | 78.0 | 7.06e-01 | 100.0% | 80.3% |
| 2etnB01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.86 | 79.0 | 6.89e-01 | 100.0% | 69.7% |
| 3r84B00 | 6.10.280.160 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 | 0.86 | 80.0 | 6.82e-01 | 100.0% | 80.0% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.86 | 69.0 | 5.45e-01 | 86.8% | 83.3% |
| 3txsC01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.85 | 76.0 | 6.74e-01 | 100.0% | 76.0% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.84 | 76.0 | 6.86e-01 | 100.0% | 83.1% |
| 2qe7G01 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.84 | 76.0 | 6.14e-01 | 100.0% | 90.7% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.84 | 77.0 | 6.32e-01 | 100.0% | 62.2% |
| 4lunU00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.84 | 72.0 | 4.36e-01 | 100.0% | 16.1% |
| 4kzsA02 | 6.10.140.1870 | Special › Helix non-globular › Helix Hairpins › | 0.83 | 71.0 | 6.43e-01 | 92.5% | 77.1% |
| 1z0pA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 76.0 | 6.74e-01 | 100.0% | 72.6% |
| 2uuiA00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.83 | 69.0 | 4.84e-01 | 98.1% | 31.0% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.83 | 75.0 | 6.04e-01 | 100.0% | 64.9% |
| 1y1uA01 | 1.20.1050.20 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain | 0.83 | 76.0 | 5.00e-01 | 100.0% | 27.2% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.82 | 74.0 | 6.79e-01 | 100.0% | 79.4% |
| 2qywA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.82 | 74.0 | 6.06e-01 | 100.0% | 63.2% |
| 6ygiB01 | 1.10.4090.10 | Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus | 0.81 | 73.0 | 5.23e-01 | 100.0% | 37.7% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.81 | 72.0 | 6.54e-01 | 100.0% | 75.0% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.81 | 66.0 | 6.72e-01 | 90.6% | 94.1% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.81 | 73.0 | 5.81e-01 | 100.0% | 60.4% |
| 1luwA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.80 | 70.0 | 6.61e-01 | 100.0% | 81.2% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.79 | 68.0 | 4.69e-01 | 100.0% | 86.9% |
| 2gtaA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.78 | 62.0 | 5.12e-01 | 88.7% | 55.7% |
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.77 | 65.0 | 4.97e-01 | 100.0% | 40.8% |
| 1b3qA01 | 1.10.287.560 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain | 0.76 | 65.0 | 6.25e-01 | 100.0% | 85.5% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.75 | 68.0 | 6.04e-01 | 100.0% | 71.6% |
| 2x2vA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.75 | 66.0 | 6.14e-01 | 100.0% | 89.7% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.75 | 66.0 | 5.87e-01 | 100.0% | 83.1% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.75 | 64.0 | 4.86e-01 | 100.0% | 70.7% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 65.0 | 5.30e-01 | 100.0% | 60.4% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.75 | 63.0 | 4.68e-01 | 100.0% | 36.4% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.73 | 62.0 | 5.90e-01 | 100.0% | 85.9% |
| 5dn6J00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.72 | 62.0 | 5.64e-01 | 100.0% | 71.6% |
| 4cqiA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 57.0 | 4.62e-01 | 90.6% | 78.5% |
| 6zhiB02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.72 | 61.0 | 5.30e-01 | 100.0% | 62.7% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 59.0 | 5.43e-01 | 100.0% | 74.0% |
| 2wgmA01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.71 | 62.0 | 5.38e-01 | 100.0% | 64.6% |
| 4a17U01 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 55.0 | 4.97e-01 | 94.3% | 62.3% |
| 3vkgB03 | 1.20.58.1120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 | 0.70 | 58.0 | 4.30e-01 | 100.0% | 35.3% |
| 1kfdA02 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.70 | 59.0 | 5.45e-01 | 100.0% | 74.6% |
| 2d2sA02 | 1.20.58.1220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain | 0.69 | 56.0 | 4.62e-01 | 92.5% | 89.1% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 55.0 | 5.05e-01 | 98.1% | 67.1% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 54.0 | 5.15e-01 | 94.3% | 73.8% |
| 1sg2A00 | 3.30.910.20 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain | 0.68 | 56.0 | 4.27e-01 | 100.0% | 39.0% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 55.0 | 4.97e-01 | 100.0% | 65.4% |
| 1w53A00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.68 | 50.0 | 4.35e-01 | 83.0% | 51.2% |
| 2bdeA03 | 1.20.58.1160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 56.0 | 5.09e-01 | 100.0% | 70.1% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.67 | 51.0 | 5.02e-01 | 90.6% | 79.7% |
| 1pd3A00 | 1.10.287.230 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 54.0 | 5.41e-01 | 98.1% | 96.3% |
| 1u00A02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.63 | 58.0 | 4.69e-01 | 100.0% | 63.5% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 51.0 | 4.60e-01 | 100.0% | 80.7% |
| 1vx7301 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 49.0 | 4.52e-01 | 94.3% | 66.2% |
| 1fx0A03 | 1.20.150.20 | Mainly Alpha › Up-down Bundle › Lysin › ATP synthase alpha/beta chain, C-terminal domain | 0.61 | 48.0 | 3.70e-01 | 90.6% | 69.8% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.61 | 47.0 | 4.26e-01 | 84.9% | 89.2% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 49.0 | 3.97e-01 | 90.6% | 56.2% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4177363 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.94 | 89.0 | 6.21e-01 | 100.0% | 36.6% |
| 3676117 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.94 | 84.0 | 5.16e-01 | 98.1% | 19.2% |
| 5035167 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.94 | 89.0 | 5.10e-01 | 100.0% | 14.8% |
| 4405928 | 5086.1.1.196 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YknX | 0.93 | 88.0 | 7.88e-01 | 100.0% | 85.7% |
| 5018636 | 605.1.1.3 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_2 | 0.93 | 88.0 | 7.84e-01 | 100.0% | 95.7% |
| 3187995 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.91 | 84.0 | 6.45e-01 | 100.0% | 54.5% |
| 60297 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.90 | 82.0 | 7.23e-01 | 100.0% | 70.7% |
| 3344575 | 9.26.1.0 ↗ | beta barrels › Lipocalins/Streptavidin | 0.89 | 81.0 | 5.35e-01 | 100.0% | 29.2% |
| 3349325 | 5086.1.1.135 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF7615 | 0.88 | 81.0 | 6.97e-01 | 100.0% | 75.0% |
| 3946910 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.87 | 79.0 | 5.30e-01 | 100.0% | 36.2% |
| 315449 | 192.8.1.2 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Hanta_nucleocap | 0.85 | 77.0 | 6.79e-01 | 100.0% | 75.0% |
| 3231996 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.85 | 75.0 | 5.76e-01 | 100.0% | 44.2% |
| 4941675 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.84 | 77.0 | 4.36e-01 | 100.0% | 10.9% |
| 4942772 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.84 | 78.0 | 7.20e-01 | 100.0% | 81.5% |
| 3491418 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.84 | 74.0 | 6.60e-01 | 100.0% | 76.0% |
| 3487862 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.84 | 74.0 | 4.74e-01 | 100.0% | 23.7% |
| 3531746 | 603.1.1.105 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 | 0.83 | 75.0 | 5.91e-01 | 100.0% | 54.3% |
| 3241365 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.83 | 73.0 | 5.17e-01 | 100.0% | 33.1% |
| 3556027 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.82 | 73.0 | 6.24e-01 | 100.0% | 68.2% |
| 3829728 | 601.17.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Group V grass pollen allergen › Group V grass pollen allergen | 0.82 | 73.0 | 4.57e-01 | 98.1% | 20.0% |
| 3215306 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.82 | 73.0 | 6.22e-01 | 100.0% | 62.4% |
| 3944950 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.82 | 73.0 | 6.88e-01 | 100.0% | 81.5% |
| 3681259 | 5058.1.1.57 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › V-SNARE | 0.82 | 73.0 | 6.21e-01 | 100.0% | 62.4% |
| 3855461 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.82 | 73.0 | 6.22e-01 | 100.0% | 68.2% |
| 2323907 | 212.1.1.24 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 | 0.81 | 72.0 | 4.71e-01 | 100.0% | 25.6% |
| 4026585 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.80 | 71.0 | 4.64e-01 | 100.0% | 28.0% |
| 3194153 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.80 | 72.0 | 5.91e-01 | 100.0% | 82.1% |
| 3269429 | 603.2.1.2 ↗ | alpha bundles › STAT-like › STAT › STAT › Dict-STAT-coil | 0.80 | 69.0 | 5.43e-01 | 100.0% | 50.4% |
| 3561663 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.77 | 72.0 | 6.92e-01 | 100.0% | 89.8% |
| 3686368 | 611.1.1.1 ↗ | alpha bundles › N-cbl like › Transferrin receptor ectodomain, C-terminal domain › Transferrin receptor ectodomain, C-terminal domain › TFR_dimer | 0.76 | 65.0 | 4.77e-01 | 100.0% | 34.6% |
| 3185270 | 611.1.1.1 ↗ | alpha bundles › N-cbl like › Transferrin receptor ectodomain, C-terminal domain › Transferrin receptor ectodomain, C-terminal domain › TFR_dimer | 0.76 | 66.0 | 4.67e-01 | 100.0% | 32.1% |
| 3633783 | 611.1.1.1 ↗ | alpha bundles › N-cbl like › Transferrin receptor ectodomain, C-terminal domain › Transferrin receptor ectodomain, C-terminal domain › TFR_dimer | 0.76 | 66.0 | 4.55e-01 | 100.0% | 29.4% |
| 3930829 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.75 | 65.0 | 5.86e-01 | 100.0% | 72.0% |
| 3808 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.75 | 65.0 | 5.22e-01 | 100.0% | 57.5% |
| 3218879 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.74 | 62.0 | 6.04e-01 | 100.0% | 86.7% |
| 4081214 | 605.1.1.290 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Phage_Nu1 | 0.73 | 63.0 | 5.84e-01 | 100.0% | 81.4% |
| 3469530 | 3274.1.1.1 ↗ | extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 | 0.73 | 62.0 | 4.65e-01 | 100.0% | 38.6% |
| 4336724 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.73 | 62.0 | 5.00e-01 | 100.0% | 49.1% |
| 3794795 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.71 | 59.0 | 4.98e-01 | 100.0% | 54.0% |
| 3391706 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.71 | 59.0 | 4.59e-01 | 100.0% | 41.5% |
| 3962893 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.71 | 60.0 | 5.10e-01 | 100.0% | 56.8% |
| 4617177 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.70 | 61.0 | 5.01e-01 | 100.0% | 54.0% |
| 3552520 | 241.15.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 | 0.70 | 60.0 | 5.69e-01 | 98.1% | 81.5% |
| 1790834 | 3086.1.1.1 ↗ | alpha bundles › Diacylglycerol kinase (DAGK) › Diacylglycerol kinase (DAGK) › Diacylglycerol kinase (DAGK) › DAGK_prokar | 0.68 | 58.0 | 5.07e-01 | 100.0% | 66.7% |
| 4984327 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.68 | 55.0 | 4.62e-01 | 100.0% | 75.2% |
| 2602757 | 568.1.1.3 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › UPF0203 | 0.67 | 53.0 | 5.36e-01 | 98.1% | 96.1% |
| 2602752 | 3981.1.1.1 ↗ | alpha bundles › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › UPF0203 | 0.67 | 52.0 | 5.29e-01 | 96.2% | 94.1% |
| None | — | 0.61 | 49.0 | 3.11e-01 | 98.1% | 15.9% |
D3
medium
residues 3-40
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dliA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 51.0 | 3.24e-01 | 94.7% | 36.2% |
| 1bkjA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.63 | 51.0 | 3.21e-01 | 94.7% | 40.0% |
D4
medium
residues 42-142
Domain cluster:
rep: IMGVR_UViG_3300000151_000068-3300000151-SI53jan11_200mDRAFT_10025342__D35-172
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rcnA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.83 | 48.0 | 6.04e-01 | 70.3% | 95.1% |
| 1bkbA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.78 | 48.0 | 5.93e-01 | 70.3% | 96.9% |
| 1t9hA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.74 | 47.0 | 5.49e-01 | 70.3% | 90.4% |
| 1ckmA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.72 | 43.0 | 4.75e-01 | 84.2% | 73.5% |
| 1khiA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.70 | 48.0 | 5.61e-01 | 73.3% | 100.0% |
| 2qcpX01 | 2.40.50.320 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF | 0.66 | 47.0 | 5.34e-01 | 80.2% | 100.0% |
| 3q8dA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 47.0 | 5.24e-01 | 78.2% | 98.7% |
| 3er0A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 43.0 | 4.95e-01 | 83.2% | 98.6% |
| 1x6oA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 46.0 | 5.07e-01 | 80.2% | 98.7% |
| 3trzA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 47.0 | 5.02e-01 | 97.0% | 98.9% |
| 8aasC01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 46.0 | 4.62e-01 | 83.2% | 81.4% |
| 3nswA00 | 2.40.50.780 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 44.0 | 4.43e-01 | 85.1% | 81.1% |
| 3lp8A03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.55 | 48.0 | 4.32e-01 | 96.0% | 90.6% |
| 3zyyX03 | 3.10.20.880 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 40.0 | 4.29e-01 | 83.2% | 89.7% |
| 4a18P00 | 3.30.720.90 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.53 | 31.0 | 3.64e-01 | 95.0% | 87.9% |
| 3ow8C00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 43.0 | 3.17e-01 | 92.1% | 92.0% |
| 4dimA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 45.0 | 3.63e-01 | 99.0% | 53.3% |
| 4hz9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 36.0 | 3.41e-01 | 73.3% | 97.6% |
| 4i9xA00 | 2.60.40.3790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 35.0 | 2.90e-01 | 72.3% | 98.9% |
| 1e8uA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.50 | 39.0 | 2.61e-01 | 85.1% | 69.5% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4399115 | 2.1.1.13 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a | 0.78 | 49.0 | 5.97e-01 | 70.3% | 98.5% |
| 3711866 | 2.1.1.106 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PRS7_OB | 0.76 | 50.0 | 5.01e-01 | 80.2% | 64.8% |
| 3797107 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 51.0 | 5.23e-01 | 73.3% | 83.2% |
| 3687458 | 2.1.1.13 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a | 0.71 | 49.0 | 5.64e-01 | 80.2% | 97.3% |
| 5058404 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 44.0 | 4.29e-01 | 78.2% | 58.2% |
| 370 | 2.1.1.28 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C | 0.70 | 43.0 | 4.60e-01 | 84.2% | 70.8% |
| 4637390 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 40.0 | 4.93e-01 | 99.0% | 96.7% |
| 5030269 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 54.0 | 5.57e-01 | 85.1% | 87.4% |
| 4288723 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.67 | 46.0 | 5.23e-01 | 71.3% | 96.0% |
| 3621173 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.67 | 45.0 | 4.98e-01 | 73.3% | 87.5% |
| 4295766 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 46.0 | 5.28e-01 | 72.3% | 97.3% |
| 4262785 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.66 | 48.0 | 5.29e-01 | 79.2% | 96.2% |
| 4085660 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.65 | 47.0 | 5.22e-01 | 99.0% | 96.2% |
| 4072975 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.65 | 48.0 | 5.29e-01 | 94.1% | 98.8% |
| 4082776 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.65 | 47.0 | 5.17e-01 | 99.0% | 96.2% |
| 4200438 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.64 | 47.0 | 5.15e-01 | 99.0% | 96.2% |
| 3797361 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 45.0 | 4.24e-01 | 74.3% | 59.2% |
| 3953289 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.63 | 48.0 | 5.13e-01 | 99.0% | 96.5% |
| 5078764 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 41.0 | 3.91e-01 | 78.2% | 80.8% |
| 4240075 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.55 | 38.0 | 3.46e-01 | 71.3% | 51.4% |
| None | — | 0.53 | 46.0 | 3.72e-01 | 100.0% | 56.7% | |
| 1954225 | 3174.4.1.1 ↗ | beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain › DUF4265 | 0.52 | 32.0 | 3.97e-01 | 73.3% | 95.5% |
| 4985499 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.51 | 43.0 | 3.55e-01 | 98.0% | 57.0% |