←Back to structures
IMGVR_UViG_3300000154_000026-3300000154-SI47jul10_150mDRAFT_100070313
Arc-VirIMGVR_UViG_3300000154_000026-3300000154-SI47jul10_150mDRAFT_100070313
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 43-61_118-235
Domain cluster:
rep: pig_ID_885_F13_scaffold_14_curated_prodigal-single.1__X__X__00028__D17-130
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d37B01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.84 | 48.0 | 4.40e-01 | 100.0% | 44.8% |
| 3bp6B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.76 | 36.0 | 4.39e-01 | 86.9% | 69.3% |
| 3cddA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.76 | 51.0 | 4.59e-01 | 100.0% | 51.1% |
| 2p5zX01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.75 | 47.0 | 4.37e-01 | 97.8% | 51.2% |
| 4bfiB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.74 | 33.0 | 4.03e-01 | 85.4% | 64.4% |
| 6c98A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.72 | 35.0 | 4.25e-01 | 86.9% | 70.3% |
| 2ca9A02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.70 | 33.0 | 4.09e-01 | 88.3% | 69.7% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.70 | 45.0 | 5.32e-01 | 94.2% | 93.7% |
| 2bc4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 35.0 | 3.89e-01 | 86.9% | 61.5% |
| 2gysA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 36.0 | 4.37e-01 | 86.9% | 79.1% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.68 | 42.0 | 4.91e-01 | 97.8% | 85.9% |
| 2bj3D02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.68 | 34.0 | 4.25e-01 | 89.8% | 79.0% |
| 1q5yC00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.68 | 33.0 | 4.12e-01 | 89.8% | 75.6% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.66 | 33.0 | 4.29e-01 | 90.5% | 82.9% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.65 | 43.0 | 4.73e-01 | 98.5% | 81.4% |
| 2kvoA01 | 2.40.30.220 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 | 0.65 | 39.0 | 4.42e-01 | 97.8% | 78.8% |
| 1y12B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.63 | 53.0 | 5.12e-01 | 100.0% | 78.8% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.62 | 41.0 | 4.26e-01 | 94.2% | 72.0% |
| 1blxA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 38.0 | 4.51e-01 | 99.3% | 90.2% |
| 3w7bA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 33.0 | 3.94e-01 | 92.0% | 79.5% |
| 3b82A06 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 31.0 | 3.28e-01 | 90.5% | 53.7% |
| 5jv4A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 50.0 | 4.95e-01 | 100.0% | 85.9% |
| 3d4rB02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.59 | 30.0 | 4.19e-01 | 73.0% | 100.0% |
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.59 | 51.0 | 4.85e-01 | 99.3% | 80.0% |
| 4dguA01 | 2.60.40.2680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 36.0 | 3.88e-01 | 100.0% | 73.2% |
| 2n3lA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 29.0 | 3.42e-01 | 92.7% | 73.0% |
| 3g2fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 31.0 | 3.70e-01 | 99.3% | 85.1% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.54 | 46.0 | 4.68e-01 | 99.3% | 92.6% |
| 3q0bX00 | 2.30.280.10 | Mainly Beta › Roll › PUA domain-like › SRA-YDG | 0.54 | 45.0 | 4.38e-01 | 98.5% | 83.1% |
| 1vi7A01 | 3.30.230.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Impact, N-terminal domain | 0.52 | 35.0 | 3.61e-01 | 86.1% | 71.1% |
| 1k8wA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.50 | 40.0 | 3.31e-01 | 83.9% | 52.7% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 32.0 | 3.49e-01 | 93.4% | 78.9% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3586477 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.89 | 85.0 | 7.71e-01 | 100.0% | 97.1% |
| 4393593 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.81 | 54.0 | 6.46e-01 | 100.0% | 97.9% |
| 3966429 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.81 | 52.0 | 6.37e-01 | 98.5% | 100.0% |
| 3970827 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.80 | 49.0 | 6.16e-01 | 97.1% | 100.0% |
| 3968713 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.79 | 51.0 | 6.24e-01 | 100.0% | 98.9% |
| 4929587 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.78 | 50.0 | 6.06e-01 | 96.4% | 98.9% |
| 3943691 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.78 | 52.0 | 6.21e-01 | 98.5% | 98.9% |
| 3967435 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.77 | 51.0 | 6.06e-01 | 100.0% | 96.8% |
| 4810019 | 1.1.13.57 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 | 0.77 | 56.0 | 6.16e-01 | 100.0% | 91.8% |
| 3379194 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.77 | 33.0 | 4.40e-01 | 81.0% | 73.3% |
| 3974464 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.77 | 41.0 | 5.41e-01 | 80.3% | 94.7% |
| 3966280 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.77 | 51.0 | 6.01e-01 | 100.0% | 96.8% |
| 3948350 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.77 | 54.0 | 6.21e-01 | 97.8% | 98.0% |
| 3603127 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.76 | 49.0 | 5.96e-01 | 99.3% | 100.0% |
| 4247994 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.75 | 53.0 | 6.14e-01 | 97.8% | 99.0% |
| 3941988 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.75 | 59.0 | 6.42e-01 | 100.0% | 98.3% |
| 3873214 | 11.1.1.363 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 | 0.74 | 37.0 | 4.38e-01 | 86.9% | 68.4% |
| 4888819 | 1.1.13.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_1 | 0.74 | 56.0 | 6.14e-01 | 100.0% | 95.5% |
| 4094235 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.72 | 46.0 | 4.86e-01 | 100.0% | 70.4% |
| 3261290 | 11.1.1.843 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 | 0.72 | 40.0 | 4.25e-01 | 86.9% | 60.0% |
| 3978573 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.71 | 52.0 | 5.85e-01 | 100.0% | 98.1% |
| 5079559 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.71 | 55.0 | 5.96e-01 | 100.0% | 95.7% |
| 4344991 | 1.1.5.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › YwpF | 0.70 | 49.0 | 5.09e-01 | 99.3% | 76.2% |
| 3958901 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.67 | 32.0 | 3.96e-01 | 86.9% | 71.8% |
| 4977748 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.67 | 32.0 | 4.09e-01 | 86.9% | 77.5% |
| 3950550 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.67 | 32.0 | 4.04e-01 | 86.9% | 76.2% |
| 3969448 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.64 | 47.0 | 5.35e-01 | 95.6% | 99.0% |
| 2595159 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.64 | 56.0 | 5.24e-01 | 100.0% | 77.1% |
| 3504737 | 1.1.13.54 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_L | 0.61 | 57.0 | 5.65e-01 | 100.0% | 97.1% |
| 3949305 | 1.1.13.54 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_L | 0.61 | 57.0 | 5.59e-01 | 100.0% | 95.2% |
| 5065094 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.60 | 34.0 | 3.59e-01 | 94.9% | 60.0% |
| 2794603 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.59 | 35.0 | 4.28e-01 | 77.4% | 93.0% |
| 4261744 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.59 | 50.0 | 5.21e-01 | 99.3% | 99.2% |
| 4957338 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.54 | 41.0 | 4.19e-01 | 100.0% | 83.1% |
| 3840640 | 11.1.1.363 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 | 0.54 | 29.0 | 2.98e-01 | 91.2% | 50.4% |
| 3302927 | 1.1.9.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA | 0.54 | 45.0 | 3.67e-01 | 97.1% | 48.6% |
D2
high
residues 574-608_804-866
Domain cluster:
representative
CATH (51)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wruA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.77 | 63.0 | 5.04e-01 | 90.8% | 47.4% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.77 | 66.0 | 6.69e-01 | 90.8% | 97.9% |
| 3d37B01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.76 | 65.0 | 5.25e-01 | 90.8% | 50.6% |
| 2p5zX01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.73 | 57.0 | 4.76e-01 | 90.8% | 48.8% |
| 1twfB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.67 | 48.0 | 4.37e-01 | 73.5% | 93.5% |
| 1t7vA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 44.0 | 4.63e-01 | 78.6% | 73.3% |
| 3lnnA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.67 | 49.0 | 5.04e-01 | 92.9% | 80.6% |
| 1y12B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.66 | 55.0 | 4.72e-01 | 89.8% | 75.6% |
| 4bfiB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 41.0 | 4.30e-01 | 76.5% | 72.2% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.62 | 50.0 | 4.63e-01 | 90.8% | 68.0% |
| 2je8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 43.0 | 4.15e-01 | 78.6% | 64.5% |
| 3q0bX00 | 2.30.280.10 | Mainly Beta › Roll › PUA domain-like › SRA-YDG | 0.60 | 55.0 | 4.76e-01 | 100.0% | 78.4% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 40.0 | 4.38e-01 | 77.6% | 82.9% |
| 3fgeA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 52.0 | 4.25e-01 | 93.9% | 69.8% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.59 | 47.0 | 3.72e-01 | 86.7% | 77.1% |
| 2w59A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 42.0 | 4.23e-01 | 78.6% | 73.0% |
| 1dr9A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 39.0 | 4.04e-01 | 77.6% | 70.5% |
| 2x8kA01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.59 | 50.0 | 4.89e-01 | 90.8% | 85.7% |
| 4fomA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 39.0 | 3.92e-01 | 77.6% | 66.7% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 51.0 | 4.41e-01 | 93.9% | 74.1% |
| 2q7aA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 48.0 | 4.14e-01 | 100.0% | 57.9% |
| 6ue9L02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 42.0 | 3.92e-01 | 77.6% | 61.5% |
| 1rz1A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 50.0 | 4.29e-01 | 93.9% | 71.7% |
| 1vs3A02 | 3.30.70.660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain | 0.58 | 41.0 | 3.61e-01 | 73.5% | 73.6% |
| 4l82A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 50.0 | 4.24e-01 | 93.9% | 71.8% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 35.0 | 3.63e-01 | 72.4% | 65.6% |
| 1a6aB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 39.0 | 3.92e-01 | 77.6% | 70.4% |
| 2onlC01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 36.0 | 3.87e-01 | 82.7% | 75.6% |
| 2yqzA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 40.0 | 3.19e-01 | 74.5% | 43.5% |
| 7cayA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.55 | 42.0 | 4.21e-01 | 90.8% | 80.0% |
| 3o1lB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 36.0 | 3.84e-01 | 74.5% | 75.0% |
| 7dl8C01 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.55 | 38.0 | 3.99e-01 | 85.7% | 78.7% |
| 2x7gA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 38.0 | 3.96e-01 | 81.6% | 79.5% |
| 5w7tA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 40.0 | 4.03e-01 | 80.6% | 77.3% |
| 1h4uA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.54 | 43.0 | 3.23e-01 | 84.7% | 84.9% |
| 5wy8B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.88e-01 | 79.6% | 74.1% |
| 3lvtA03 | 2.60.40.2210 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 42.0 | 3.86e-01 | 84.7% | 84.5% |
| 6dw1A00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.54 | 46.0 | 3.59e-01 | 93.9% | 51.0% |
| 2efjA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 42.0 | 3.21e-01 | 95.9% | 37.9% |
| 6d6tA01 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.53 | 43.0 | 3.45e-01 | 90.8% | 83.3% |
| 4lubB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 34.0 | 3.47e-01 | 73.5% | 65.0% |
| 4r6uA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.69e-01 | 79.6% | 69.9% |
| 1mruA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 39.0 | 4.04e-01 | 81.6% | 83.7% |
| 5qinA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 37.0 | 3.89e-01 | 81.6% | 84.7% |
| 4b9dB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 35.0 | 3.60e-01 | 81.6% | 73.1% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 39.0 | 3.78e-01 | 84.7% | 72.5% |
| 3ahpA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 3.68e-01 | 77.6% | 76.4% |
| 3g2fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 36.0 | 3.83e-01 | 83.7% | 85.1% |
| 4wsqB00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.50 | 39.0 | 2.77e-01 | 83.7% | 44.8% |
| 3w7bA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 34.0 | 3.61e-01 | 78.6% | 78.4% |
| 1y0hB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 36.0 | 3.64e-01 | 77.6% | 74.5% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3973341 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.87 | 65.0 | 6.94e-01 | 90.8% | 88.2% |
| 3943170 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.84 | 66.0 | 6.94e-01 | 90.8% | 88.9% |
| 5002753 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.82 | 67.0 | 7.12e-01 | 89.8% | 97.6% |
| 4889790 | 3071.1.1.7 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › PF30637 | 0.79 | 66.0 | 5.44e-01 | 87.8% | 94.0% |
| 5002662 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.78 | 64.0 | 6.37e-01 | 89.8% | 84.0% |
| 2475125 | 3071.1.1.7 ↗ | a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › PF30637 | 0.78 | 64.0 | 5.34e-01 | 85.7% | 90.5% |
| 3604610 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.78 | 51.0 | 6.11e-01 | 73.5% | 100.0% |
| 4031753 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.74 | 57.0 | 5.85e-01 | 90.8% | 83.2% |
| 3511358 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.74 | 64.0 | 6.35e-01 | 90.8% | 97.0% |
| 4031285 | 1.1.13.64 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › TT1_Tal | 0.73 | 58.0 | 6.04e-01 | 91.8% | 91.1% |
| 3943689 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.72 | 60.0 | 5.80e-01 | 90.8% | 88.2% |
| 4001482 | 389.4.1.7 ↗ | few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 | 0.71 | 38.0 | 4.29e-01 | 71.4% | 68.0% |
| 4608778 | 1.1.7.107 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 | 0.71 | 57.0 | 5.29e-01 | 99.0% | 69.2% |
| 3944430 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.71 | 59.0 | 5.84e-01 | 90.8% | 89.5% |
| 3667432 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.70 | 47.0 | 4.82e-01 | 76.5% | 70.5% |
| 4936008 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.70 | 50.0 | 5.11e-01 | 100.0% | 75.8% |
| 4002415 | 389.2.1.3 ↗ | few secondary structure elements › EGF-like › Serine protease inhibitors › Serine protease inhibitors › TIL_2 | 0.70 | 37.0 | 4.50e-01 | 71.4% | 78.5% |
| 4319057 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.69 | 52.0 | 4.93e-01 | 91.8% | 67.8% |
| 3970830 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.67 | 55.0 | 5.52e-01 | 90.8% | 86.0% |
| 3969448 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.67 | 55.0 | 5.40e-01 | 87.8% | 100.0% |
| 1914511 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.67 | 52.0 | 4.75e-01 | 100.0% | 63.8% |
| 4036849 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.66 | 54.0 | 4.91e-01 | 100.0% | 64.7% |
| 4551243 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.66 | 52.0 | 4.81e-01 | 100.0% | 65.6% |
| 4217523 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.66 | 53.0 | 4.91e-01 | 100.0% | 67.2% |
| 4402697 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.66 | 52.0 | 4.87e-01 | 100.0% | 68.3% |
| 4562905 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.66 | 52.0 | 4.83e-01 | 100.0% | 66.4% |
| 3970827 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.66 | 52.0 | 5.59e-01 | 83.7% | 98.8% |
| 4094235 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.65 | 52.0 | 4.79e-01 | 100.0% | 66.4% |
| 3934937 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.64 | 58.0 | 4.65e-01 | 100.0% | 94.2% |
| 3653406 | 304.12.1.9 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › DUF7049 | 0.64 | 44.0 | 5.10e-01 | 75.5% | 100.0% |
| 5067380 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.63 | 58.0 | 5.08e-01 | 100.0% | 90.0% |
| 3537229 | 310.3.1.21 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › HNOB | 0.63 | 50.0 | 4.94e-01 | 85.7% | 86.7% |
| 3760913 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.62 | 53.0 | 4.94e-01 | 93.9% | 97.6% |
| 4538400 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.61 | 50.0 | 4.58e-01 | 100.0% | 66.9% |
| 3909822 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 51.0 | 4.97e-01 | 93.9% | 88.2% |
| 5051036 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.59 | 52.0 | 4.21e-01 | 99.0% | 95.4% |
| 3648031 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.58 | 43.0 | 3.15e-01 | 83.7% | 28.7% |
| 4467967 | 206.1.3.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 | 0.58 | 41.0 | 2.93e-01 | 74.5% | 46.2% |
| 3213160 | 11.12.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like | 0.57 | 43.0 | 3.47e-01 | 78.6% | 46.5% |
| 4968263 | 1.1.5.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_C | 0.57 | 52.0 | 3.99e-01 | 100.0% | 59.5% |
| 3797730 | 271.1.1.0 ↗ | beta barrels › GFP-like › GFP-like › GFP-like | 0.56 | 44.0 | 3.42e-01 | 83.7% | 96.8% |
| 4087300 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.56 | 36.0 | 3.56e-01 | 70.4% | 60.0% |
| 4097022 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.55 | 42.0 | 3.13e-01 | 81.6% | 55.0% |
| 3915850 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.54 | 37.0 | 2.43e-01 | 78.6% | 14.7% |
| 3178364 | 319.1.1.19 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29696 | 0.54 | 39.0 | 3.90e-01 | 76.5% | 100.0% |
| 4201836 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.54 | 40.0 | 3.02e-01 | 78.6% | 79.2% |
| 3689349 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 41.0 | 2.73e-01 | 83.7% | 52.2% |
| 4118973 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.53 | 42.0 | 3.93e-01 | 85.7% | 78.3% |
| 4205431 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.53 | 34.0 | 3.46e-01 | 70.4% | 66.3% |
| 4190012 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.52 | 37.0 | 2.89e-01 | 75.5% | 36.0% |
| 3516834 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.51 | 45.0 | 3.27e-01 | 100.0% | 94.9% |
| 4243446 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.51 | 39.0 | 2.81e-01 | 83.7% | 27.7% |
| 3209486 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 39.0 | 2.63e-01 | 83.7% | 47.2% |
D3
medium
residues 237-305
Domain cluster:
representative
D4
medium
residues 306-364
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.63 | 43.0 | 4.12e-01 | 100.0% | 60.9% |
| 1vlaA01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.61 | 39.0 | 4.39e-01 | 81.4% | 90.5% |
| 2x9oA00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.60 | 51.0 | 3.48e-01 | 98.3% | 29.6% |
| 5dl7A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.60 | 52.0 | 3.19e-01 | 100.0% | 29.6% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.58 | 48.0 | 3.39e-01 | 93.2% | 29.9% |
| 1iwmA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.57 | 43.0 | 3.16e-01 | 96.6% | 28.2% |
| 3iibA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.56 | 48.0 | 3.14e-01 | 100.0% | 88.4% |
| 2hzmA02 | 2.20.140.20 | Mainly Beta › Single Sheet › q64v53_bacfr protein fold › | 0.55 | 39.0 | 3.54e-01 | 89.8% | 52.9% |
| 1u0tA02 | 2.60.200.30 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 | 0.55 | 42.0 | 3.26e-01 | 83.1% | 81.0% |
| 3uuwB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 47.0 | 3.37e-01 | 98.3% | 64.1% |
| 7wsoA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 42.0 | 3.69e-01 | 83.1% | 77.6% |
| 2vldB01 | 2.70.180.20 | Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › | 0.54 | 45.0 | 3.54e-01 | 91.5% | 58.5% |
| 1ya5T01 | 2.20.160.10 | Mainly Beta › Single Sheet › titin filament fold › titin domain like | 0.53 | 44.0 | 3.99e-01 | 94.9% | 92.9% |
| 2hzgB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 42.0 | 3.27e-01 | 89.8% | 81.1% |
| 4gouA02 | 2.30.29.200 | Mainly Beta › Roll › PH-domain like › | 0.52 | 47.0 | 3.42e-01 | 100.0% | 61.4% |
| 2rloA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 44.0 | 3.39e-01 | 93.2% | 43.8% |
| 3ecqA01 | 2.60.120.870 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 41.0 | 2.99e-01 | 91.5% | 53.6% |
| 3oblA00 | 2.40.128.450 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 38.0 | 3.00e-01 | 84.7% | 36.4% |
| 3hrdC02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.51 | 40.0 | 3.37e-01 | 91.5% | 54.9% |
| 6n0xF01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.51 | 41.0 | 3.10e-01 | 98.3% | 94.3% |
| 2d9vA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 38.0 | 3.19e-01 | 89.8% | 46.3% |
| 4gzvA00 | 2.40.128.490 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 | 0.50 | 39.0 | 3.04e-01 | 86.4% | 87.1% |
| 1op4A01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.50 | 37.0 | 3.36e-01 | 83.1% | 69.7% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4404709 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.69 | 47.0 | 3.36e-01 | 91.5% | 24.0% |
| 3332730 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.64 | 54.0 | 3.38e-01 | 98.3% | 46.3% |
| 3781502 | 220.1.1.228 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PKH3_C | 0.62 | 49.0 | 3.55e-01 | 86.4% | 42.9% |
| 3285612 | 331.3.1.2 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Ring_hydroxyl_A | 0.61 | 53.0 | 3.50e-01 | 98.3% | 48.6% |
| 3902817 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 53.0 | 3.25e-01 | 100.0% | 36.7% |
| 3620795 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.59 | 51.0 | 3.82e-01 | 98.3% | 53.3% |
| 3487279 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 52.0 | 3.10e-01 | 100.0% | 28.9% |
| 3565087 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.58 | 53.0 | 3.66e-01 | 100.0% | 33.0% |
| 3622714 | 5.1.5.113 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR19_1st | 0.58 | 50.0 | 3.13e-01 | 100.0% | 31.7% |
| None | — | 0.57 | 50.0 | 3.09e-01 | 100.0% | 26.0% | |
| 3499167 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 51.0 | 3.13e-01 | 100.0% | 24.6% |
| 3923579 | 5.1.4.167 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR19_1st | 0.57 | 49.0 | 3.06e-01 | 100.0% | 28.1% |
| 3511086 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.56 | 51.0 | 3.12e-01 | 100.0% | 32.2% |
| 3736837 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.56 | 46.0 | 3.84e-01 | 93.2% | 57.1% |
| 3819892 | 7579.1.1.3 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 | 0.55 | 44.0 | 2.92e-01 | 96.6% | 54.0% |
| 4317926 | 247.1.1.24 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B+Lactamase_B_2 | 0.55 | 47.0 | 3.20e-01 | 100.0% | 82.9% |
| 3881013 | 76.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I | 0.54 | 40.0 | 3.05e-01 | 83.1% | 61.9% |
| 5048021 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.54 | 46.0 | 3.10e-01 | 96.6% | 71.7% |
| 3197517 | 219.1.1.129 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF7770 | 0.54 | 45.0 | 3.58e-01 | 91.5% | 53.4% |
| 3621726 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.53 | 46.0 | 3.53e-01 | 93.2% | 46.4% |
| 3796013 | 220.1.1.176 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 | 0.53 | 46.0 | 3.62e-01 | 98.3% | 50.0% |
| 3190277 | 59.1.3.1 ↗ | beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_pol_I_A49 | 0.53 | 43.0 | 3.55e-01 | 94.9% | 70.8% |
| 3902508 | 11.1.1.850 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28354 | 0.53 | 40.0 | 3.51e-01 | 81.4% | 65.6% |
| 5022922 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 38.0 | 3.35e-01 | 79.7% | 68.4% |
| 3900920 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.53 | 41.0 | 3.22e-01 | 84.7% | 74.4% |
| 3242101 | 5.1.4.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 | 0.53 | 46.0 | 2.64e-01 | 100.0% | 20.0% |
| 4495404 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.52 | 46.0 | 2.94e-01 | 100.0% | 80.2% |
| 4517280 | 2.8.1.2 ↗ | beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C_2 | 0.52 | 46.0 | 4.41e-01 | 98.3% | 90.0% |
| 3867284 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.52 | 44.0 | 2.58e-01 | 100.0% | 23.4% |
| 4221113 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.51 | 42.0 | 2.90e-01 | 96.6% | 35.7% |
| 3394752 | 5.1.5.41 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_2 | 0.51 | 44.0 | 2.76e-01 | 100.0% | 29.2% |
| 4970894 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.51 | 41.0 | 2.91e-01 | 91.5% | 72.6% |
| 3964568 | 809.1.1.0 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP | 0.51 | 37.0 | 3.38e-01 | 81.4% | 64.7% |
| 4983620 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.50 | 41.0 | 3.07e-01 | 93.2% | 75.6% |
| 3898866 | 3426.1.1.0 ↗ | beta meanders › Telethonin › Telethonin › Telethonin | 0.50 | 42.0 | 4.14e-01 | 94.9% | 90.5% |
| 3400906 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.50 | 42.0 | 3.44e-01 | 91.5% | 52.4% |
D5
medium
residues 365-437_455-557
Domain cluster:
rep: S16_GE16_scaffold_5545_prodigal-single.1__X__X__00122__D102-156_213-341_433-473
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pt7G02 | 3.30.1370.180 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.59 | 22.0 | 3.42e-01 | 95.5% | 85.1% |
| 5uayA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.59 | 26.0 | 3.72e-01 | 89.2% | 87.8% |
| 4lrjA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 22.0 | 3.34e-01 | 94.3% | 84.9% |
| 4bzaA03 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.56 | 25.0 | 3.59e-01 | 81.8% | 91.1% |
| 5efrA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.55 | 26.0 | 3.80e-01 | 81.8% | 100.0% |
| 2qdfA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.55 | 26.0 | 3.62e-01 | 81.2% | 94.0% |
| 5uayA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.53 | 27.0 | 3.66e-01 | 89.2% | 98.8% |
| 2k4rA00 | 2.40.20.10 | Mainly Beta › Beta Barrel › Plasminogen Kringle 4 › Plasminogen Kringle 4 | 0.53 | 20.0 | 2.80e-01 | 93.2% | 68.8% |
| 6j09A02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.53 | 25.0 | 3.60e-01 | 89.2% | 100.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4044393 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.60 | 26.0 | 3.81e-01 | 90.3% | 95.7% |
| 3520104 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.59 | 28.0 | 3.98e-01 | 89.2% | 96.2% |
| 3388254 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.59 | 27.0 | 3.92e-01 | 89.2% | 97.3% |
| 3575511 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.59 | 28.0 | 3.69e-01 | 88.1% | 82.1% |
| 4042900 | 3121.1.1.2 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 | 0.56 | 26.0 | 3.35e-01 | 89.2% | 75.8% |
| 4492160 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.56 | 28.0 | 3.77e-01 | 81.8% | 94.1% |
| 3296275 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.55 | 26.0 | 3.63e-01 | 81.2% | 91.8% |
| 4032219 | 3121.1.1.2 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 | 0.54 | 26.0 | 3.31e-01 | 89.8% | 77.9% |
| 4948522 | 3715.1.1.1 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e | 0.53 | 28.0 | 3.71e-01 | 90.3% | 100.0% |
| 3698196 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.52 | 23.0 | 3.03e-01 | 94.9% | 74.4% |
| 5041788 | 3715.1.1.0 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e | 0.52 | 28.0 | 3.71e-01 | 90.3% | 100.0% |
| 3711381 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.52 | 27.0 | 3.74e-01 | 92.6% | 100.0% |
| 4025053 | 101.1.2.166 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM6_C | 0.51 | 22.0 | 2.86e-01 | 85.8% | 68.4% |
| 4407213 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.51 | 20.0 | 2.44e-01 | 94.3% | 49.6% |
| 4881206 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.50 | 25.0 | 3.37e-01 | 93.2% | 94.1% |
D6
medium
residues 609-664
D7
medium
residues 665-738
Domain cluster:
representative
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1736239 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.60 | 49.0 | 3.83e-01 | 91.9% | 55.7% |
| 4146693 | 603.1.1.104 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 | 0.56 | 46.0 | 3.02e-01 | 97.3% | 56.5% |