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IMGVR_UViG_3300000154_000061-3300000154-SI47jul10_150mDRAFT_100251012
Arc-VirIMGVR_UViG_3300000154_000061-3300000154-SI47jul10_150mDRAFT_100251012
Identity
- Kingdom:
- archaea
Quality
89.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-64
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zmbA02 | 6.10.170.10 | Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.95 | 57.0 | 7.23e-01 | 71.2% | 100.0% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.88 | 72.0 | 5.59e-01 | 86.4% | 87.2% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.86 | 69.0 | 5.48e-01 | 84.7% | 88.1% |
| 1t7lB01 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.79 | 53.0 | 3.15e-01 | 74.6% | 10.8% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.78 | 61.0 | 6.04e-01 | 83.1% | 91.9% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.76 | 65.0 | 5.20e-01 | 93.2% | 69.0% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.76 | 59.0 | 4.71e-01 | 83.1% | 78.1% |
| 1osnC00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.74 | 52.0 | 3.25e-01 | 74.6% | 14.7% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.74 | 58.0 | 5.25e-01 | 84.7% | 84.8% |
| 2zttA00 | 6.10.140.720 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 57.0 | 5.28e-01 | 83.1% | 86.3% |
| 2d2sA01 | 1.20.58.1210 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain | 0.69 | 51.0 | 4.18e-01 | 89.8% | 41.4% |
| 3fp3A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.69 | 51.0 | 3.99e-01 | 81.4% | 37.8% |
| 2dg7A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.69 | 61.0 | 4.29e-01 | 100.0% | 54.3% |
| 7tj4A01 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.69 | 51.0 | 4.02e-01 | 78.0% | 39.2% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.69 | 55.0 | 5.05e-01 | 88.1% | 94.9% |
| 3u4tB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.68 | 51.0 | 3.33e-01 | 81.4% | 18.7% |
| 4cpgA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.67 | 43.0 | 4.14e-01 | 71.2% | 56.5% |
| 2r5sA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.67 | 49.0 | 4.31e-01 | 79.7% | 56.8% |
| 2olvB02 | 1.10.3810.10 | Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like | 0.66 | 60.0 | 4.14e-01 | 100.0% | 89.5% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.65 | 49.0 | 3.96e-01 | 84.7% | 86.5% |
| 1iqpA03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.64 | 57.0 | 4.90e-01 | 100.0% | 77.7% |
| 6xssA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.64 | 48.0 | 4.58e-01 | 79.7% | 68.1% |
| 4gywA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.64 | 46.0 | 3.82e-01 | 79.7% | 41.4% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 45.0 | 4.60e-01 | 76.3% | 80.4% |
| 6dv2G02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 55.0 | 3.90e-01 | 98.3% | 51.1% |
| 1vhnA02 | 1.10.1200.80 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 | 0.62 | 44.0 | 4.13e-01 | 74.6% | 70.4% |
| 2ygwA01 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.61 | 45.0 | 3.44e-01 | 81.4% | 35.9% |
| 3zdmB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.61 | 40.0 | 4.25e-01 | 71.2% | 82.0% |
| 1r3dA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 47.0 | 3.07e-01 | 88.1% | 49.8% |
| 3u5ei01 | 1.10.10.1760 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36 | 0.57 | 44.0 | 4.25e-01 | 86.4% | 76.1% |
| 3ciaA03 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.56 | 45.0 | 3.53e-01 | 100.0% | 57.4% |
| 1qd1B02 | 3.30.70.670 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain | 0.56 | 43.0 | 3.27e-01 | 86.4% | 69.7% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 43.0 | 3.95e-01 | 88.1% | 98.7% |
| 1y8aA02 | 1.10.3870.10 | Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily | 0.54 | 40.0 | 3.40e-01 | 86.4% | 68.1% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 41.0 | 3.99e-01 | 86.4% | 80.6% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3720672 | 109.4.1.1591 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U-box | 0.88 | 61.0 | 3.76e-01 | 71.2% | 15.7% |
| 3961786 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.87 | 71.0 | 4.83e-01 | 86.4% | 92.4% |
| 4566201 | 3050.1.1.7 ↗ | alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal_L19e_C | 0.86 | 55.0 | 4.63e-01 | 74.6% | 43.3% |
| 3668207 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.86 | 71.0 | 4.83e-01 | 88.1% | 27.4% |
| 3200626 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.84 | 69.0 | 4.59e-01 | 86.4% | 90.0% |
| 5059586 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.83 | 66.0 | 5.95e-01 | 84.7% | 65.8% |
| 4358621 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.83 | 64.0 | 5.73e-01 | 81.4% | 75.9% |
| 4131981 | 3050.1.1.7 ↗ | alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal_L19e_C | 0.82 | 55.0 | 4.76e-01 | 78.0% | 48.2% |
| 3515268 | 186.2.1.0 ↗ | alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain | 0.81 | 61.0 | 4.95e-01 | 79.7% | 47.6% |
| 3957298 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.79 | 63.0 | 5.39e-01 | 84.7% | 70.0% |
| 5021741 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.78 | 66.0 | 6.20e-01 | 94.9% | 75.7% |
| 3660 | 633.10.1.1 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › 23S_rRNA_IVP | 0.78 | 62.0 | 4.96e-01 | 86.4% | 79.6% |
| 4971062 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.77 | 53.0 | 4.66e-01 | 71.2% | 51.8% |
| 2889550 | 4995.1.1.0 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like | 0.77 | 62.0 | 5.40e-01 | 84.7% | 90.5% |
| 3349030 | 109.4.1.1261 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long | 0.77 | 62.0 | 4.69e-01 | 88.1% | 57.0% |
| 4565836 | 4146.1.1.1 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › YqgQ-like | 0.76 | 61.0 | 5.73e-01 | 86.4% | 87.1% |
| 5054079 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.76 | 53.0 | 4.74e-01 | 72.9% | 53.8% |
| 3818544 | 109.4.1.1292 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3 | 0.75 | 57.0 | 3.74e-01 | 84.7% | 20.1% |
| 4188577 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.75 | 68.0 | 4.34e-01 | 100.0% | 44.2% |
| 3841169 | 186.2.1.1 ↗ | alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box | 0.75 | 57.0 | 4.18e-01 | 83.1% | 34.2% |
| 4927448 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.74 | 60.0 | 5.37e-01 | 86.4% | 91.3% |
| 3165461 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.74 | 66.0 | 4.25e-01 | 100.0% | 44.2% |
| 3821022 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.74 | 53.0 | 3.39e-01 | 83.1% | 16.9% |
| 3486312 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.74 | 51.0 | 4.08e-01 | 72.9% | 37.8% |
| 5029911 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.74 | 58.0 | 5.85e-01 | 84.7% | 96.6% |
| 3708001 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.74 | 53.0 | 5.06e-01 | 76.3% | 64.3% |
| 4977761 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.74 | 61.0 | 5.20e-01 | 88.1% | 80.0% |
| 3519232 | 109.4.1.893 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP6_C | 0.73 | 54.0 | 4.08e-01 | 79.7% | 32.4% |
| 3892460 | 548.1.1.1 ↗ | alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP | 0.73 | 51.0 | 5.08e-01 | 76.3% | 71.7% |
| 3555742 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.73 | 55.0 | 4.85e-01 | 81.4% | 75.3% |
| 4984709 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.72 | 59.0 | 5.25e-01 | 86.4% | 90.0% |
| 3276289 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.69 | 54.0 | 3.64e-01 | 84.7% | 83.6% |
| 3654165 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.68 | 50.0 | 3.59e-01 | 79.7% | 26.9% |
| 3655766 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.67 | 49.0 | 3.64e-01 | 79.7% | 29.7% |
| 3784009 | 138.1.1.2 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C | 0.67 | 52.0 | 4.56e-01 | 88.1% | 94.7% |
| 3655765 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.67 | 50.0 | 3.24e-01 | 81.4% | 27.8% |
| 3284485 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.67 | 60.0 | 4.45e-01 | 96.6% | 77.1% |
| 3466671 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.67 | 49.0 | 3.13e-01 | 81.4% | 25.6% |
| 5020255 | 138.1.1.2 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C | 0.66 | 60.0 | 5.25e-01 | 100.0% | 89.4% |
| 3824465 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.66 | 47.0 | 3.66e-01 | 79.7% | 32.4% |
| 3519406 | 5.1.4.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 | 0.64 | 54.0 | 3.24e-01 | 100.0% | 15.8% |
| 3437191 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.59 | 47.0 | 3.89e-01 | 91.5% | 60.5% |
| 3802522 | 109.4.1.1272 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif | 0.58 | 49.0 | 2.89e-01 | 98.3% | 33.8% |
| 4950386 | 138.1.1.2 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C | 0.56 | 47.0 | 4.06e-01 | 100.0% | 69.0% |