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IMGVR_UViG_3300000154_000217-3300000154-SI47jul10_150mDRAFT_100077515

Arc-Vir

IMGVR_UViG_3300000154_000217-3300000154-SI47jul10_150mDRAFT_100077515

Quality

72.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-50
PDB
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.68 59.0 4.79e-01 100.0% 59.8%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.65 48.0 3.95e-01 81.2% 48.9%
2mv2A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.63 48.0 3.54e-01 100.0% 29.7%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.62 47.0 4.26e-01 100.0% 60.6%
7ct1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 50.0 4.33e-01 100.0% 94.1%
6qlyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 48.0 4.21e-01 95.8% 90.4%
2ylmA03 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 49.0 4.11e-01 100.0% 84.5%
1z2mA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 50.0 4.38e-01 97.9% 84.4%
4bfmA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.60 42.0 2.57e-01 75.0% 94.6%
1wgyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 48.0 4.27e-01 95.8% 94.7%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 49.0 4.32e-01 100.0% 75.9%
2dafA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 48.0 4.27e-01 95.8% 93.4%
2k89A00 3.10.20.870 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PFU (PLAA family ubiquitin binding), C-terminal domain 0.60 48.0 4.27e-01 100.0% 60.0%
2zeqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 47.0 4.19e-01 95.8% 87.2%
2l7rA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 49.0 4.32e-01 95.8% 89.2%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.59 45.0 3.09e-01 87.5% 46.8%
1ywxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 47.0 3.91e-01 95.8% 55.4%
2y51A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.57 38.0 2.38e-01 70.8% 56.5%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.57 48.0 4.11e-01 100.0% 83.3%
2iaiA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 47.0 4.25e-01 91.7% 67.7%
1v6eA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 45.0 3.99e-01 95.8% 95.0%
2mqjA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 45.0 4.08e-01 100.0% 88.3%
3dadA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.57 45.0 2.76e-01 89.6% 18.2%
6djwA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 44.0 4.01e-01 95.8% 94.4%
6jl3A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 44.0 3.97e-01 95.8% 91.9%
6kykA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 43.0 3.80e-01 95.8% 96.4%
2ckaA01 3.40.5.120 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.56 40.0 4.06e-01 100.0% 79.6%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 46.0 4.02e-01 100.0% 88.6%
2kk8A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 44.0 4.02e-01 100.0% 82.2%
7pyvC02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 43.0 4.01e-01 100.0% 94.3%
4dipH00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 47.0 3.56e-01 100.0% 65.5%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 41.0 4.03e-01 100.0% 81.8%
2x3lB03 3.90.105.10 Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › Molybdopterin biosynthesis moea protein, domain 2 0.53 39.0 3.75e-01 97.9% 67.8%
3rosA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 46.0 2.85e-01 100.0% 58.6%
2napA03 3.40.228.10 Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 0.53 38.0 2.49e-01 79.2% 72.7%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4162412 2003.1.2.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase, Pyr_redox_2, NAD_binding_8 0.74 61.0 3.55e-01 100.0% 18.2%
4531952 244.1.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.74 61.0 3.53e-01 100.0% 18.3%
None 0.73 60.0 3.49e-01 100.0% 19.0%
None 0.73 60.0 3.51e-01 100.0% 18.8%
None 0.73 60.0 3.49e-01 100.0% 19.2%
4610729 244.1.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.73 60.0 4.73e-01 100.0% 78.3%
3968768 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.72 62.0 5.42e-01 100.0% 88.0%
3628286 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.70 48.0 3.50e-01 72.9% 26.2%
3763290 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.68 54.0 4.03e-01 91.7% 63.1%
3847628 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.68 54.0 4.41e-01 91.7% 89.5%
4280384 304.41.1.1 a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.67 56.0 4.01e-01 100.0% 52.7%
3617704 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 57.0 5.49e-01 100.0% 90.9%
4947243 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 56.0 4.92e-01 100.0% 89.3%
3403359 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 54.0 4.41e-01 95.8% 71.6%
3260376 221.1.1.12 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RBD 0.65 55.0 4.63e-01 97.9% 74.1%
3254286 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.64 55.0 4.62e-01 100.0% 68.2%
3485674 109.3.1.163 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5 0.64 52.0 3.14e-01 95.8% 22.7%
4442631 304.41.1.1 a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.64 51.0 3.82e-01 100.0% 56.7%
4885815 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.64 53.0 5.16e-01 95.8% 100.0%
3932747 221.1.1.36 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.64 53.0 4.52e-01 97.9% 92.9%
3534443 221.1.1.12 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RBD 0.64 52.0 4.44e-01 95.8% 85.9%
3513575 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 53.0 4.15e-01 100.0% 81.7%
3487658 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 53.0 4.49e-01 97.9% 87.1%
3940883 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 51.0 3.94e-01 95.8% 90.8%
3518216 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.63 53.0 4.69e-01 100.0% 85.3%
3620972 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.63 51.0 4.39e-01 95.8% 83.1%
3605638 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 53.0 4.51e-01 100.0% 81.2%
3929887 221.1.1.87 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 0.63 52.0 4.05e-01 95.8% 82.7%
3740139 221.1.1.46 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg 0.62 51.0 4.17e-01 95.8% 91.6%
3406258 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.62 51.0 4.25e-01 95.8% 87.8%
3258729 221.1.1.56 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_f0 0.62 51.0 4.18e-01 95.8% 95.8%
3917387 221.1.1.36 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.62 49.0 4.34e-01 95.8% 93.8%
3518192 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 46.0 4.72e-01 97.9% 93.3%
3244834 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 51.0 4.07e-01 100.0% 93.6%
3857012 221.1.1.12 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RBD 0.62 49.0 4.42e-01 95.8% 97.3%
3252830 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.62 49.0 4.22e-01 95.8% 81.2%
3177939 221.1.1.51 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_C2 0.61 48.0 4.18e-01 95.8% 92.9%
3748643 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 49.0 4.28e-01 95.8% 91.3%
3178077 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 50.0 4.40e-01 100.0% 83.7%
3785044 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 51.0 4.53e-01 97.9% 89.0%
3212416 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 49.0 4.14e-01 95.8% 94.4%
3764157 221.1.1.40 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › TUG-UBL1 0.61 50.0 4.48e-01 95.8% 97.1%
3801804 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 49.0 4.21e-01 100.0% 73.3%
3737458 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.60 49.0 4.27e-01 95.8% 81.2%
3309517 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.60 49.0 4.23e-01 100.0% 76.5%
3405569 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.60 50.0 3.99e-01 100.0% 75.5%
3330699 221.1.1.172 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_UBP8 0.60 46.0 4.00e-01 95.8% 83.3%
3850948 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.60 49.0 4.21e-01 100.0% 77.6%
3182828 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 48.0 3.61e-01 95.8% 75.6%
3629956 221.1.1.40 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › TUG-UBL1 0.59 49.0 3.93e-01 97.9% 61.9%
3260279 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.59 48.0 4.25e-01 95.8% 97.3%
3990615 221.1.1.36 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.59 47.0 4.68e-01 100.0% 92.0%
3203770 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 48.0 4.73e-01 100.0% 90.9%
3425523 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 47.0 4.05e-01 100.0% 73.3%
3709956 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.59 48.0 4.34e-01 100.0% 82.2%
3267836 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.59 49.0 4.37e-01 100.0% 77.3%
3413172 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.58 47.0 4.06e-01 97.9% 78.6%
3259141 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.58 49.0 4.62e-01 100.0% 90.0%
3576577 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.58 47.0 4.13e-01 91.7% 82.7%
3895273 221.1.1.12 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RBD 0.58 47.0 4.00e-01 95.8% 81.1%
3622513 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 48.0 4.60e-01 100.0% 88.3%
5067674 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 48.0 4.00e-01 100.0% 63.2%
4588572 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 43.0 3.90e-01 89.6% 92.0%
3719787 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 43.0 4.67e-01 100.0% 100.0%
3736625 221.1.1.46 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg 0.57 46.0 3.76e-01 100.0% 66.7%
3707503 101.1.10.20 alpha arrays › HTH › HTH › Cyclin-like › TFIIB_C_2 0.57 44.0 3.41e-01 91.7% 65.6%
2389159 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.56 44.0 3.92e-01 95.8% 87.2%
3330193 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.56 45.0 3.69e-01 95.8% 67.0%
3685669 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 42.0 3.17e-01 93.8% 76.8%
3628427 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 45.0 3.98e-01 100.0% 81.0%
3741010 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 45.0 3.85e-01 100.0% 80.0%
3484798 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 45.0 3.90e-01 100.0% 76.5%
3515065 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 44.0 3.98e-01 100.0% 90.7%
3929499 221.1.1.36 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.54 45.0 3.61e-01 100.0% 53.3%
3620971 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 45.0 4.00e-01 100.0% 89.3%
3781912 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.54 42.0 3.96e-01 100.0% 82.9%
4003832 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 43.0 3.87e-01 100.0% 92.0%
3277720 375.1.1.185 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 0.52 37.0 3.93e-01 100.0% 92.5%