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IMGVR_UViG_3300000154_000252-3300000154-SI47jul10_150mDRAFT_10055545
Arc-VirIMGVR_UViG_3300000154_000252-3300000154-SI47jul10_150mDRAFT_10055545
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-106
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.61 | 31.0 | 3.39e-01 | 83.3% | 56.5% |
| 1fm2A00 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.60 | 42.0 | 3.32e-01 | 73.6% | 68.4% |
| 4ljiB00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.60 | 48.0 | 3.94e-01 | 87.5% | 84.0% |
| 3hdoA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 42.0 | 3.51e-01 | 75.0% | 66.9% |
| 1t3aA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.55 | 46.0 | 2.97e-01 | 100.0% | 87.5% |
| 4yzrA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.54 | 46.0 | 2.93e-01 | 95.8% | 69.3% |
| 1ultB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.54 | 46.0 | 2.83e-01 | 93.1% | 34.6% |
| 1p65A00 | 6.10.140.90 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 34.0 | 3.82e-01 | 97.2% | 82.5% |
| 3ke3A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.54 | 40.0 | 2.72e-01 | 79.2% | 95.0% |
| 4evxA00 | 1.10.1740.240 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.53 | 36.0 | 3.26e-01 | 83.3% | 51.5% |
| 7z0sF01 | 3.30.70.3270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 38.0 | 3.02e-01 | 76.4% | 74.5% |
| 6ks6q01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.53 | 43.0 | 2.99e-01 | 93.1% | 39.6% |
| 1b25A02 | 1.10.569.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | 0.53 | 44.0 | 3.44e-01 | 98.6% | 75.8% |
| 3p9dE01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.53 | 43.0 | 3.01e-01 | 93.1% | 43.0% |
| 2b9sA02 | 1.10.10.41 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 | 0.52 | 34.0 | 3.22e-01 | 94.4% | 54.0% |
| 1ka1A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.52 | 43.0 | 3.13e-01 | 94.4% | 57.5% |
| 2bvfA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.52 | 36.0 | 2.96e-01 | 73.6% | 69.5% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 39.0 | 3.81e-01 | 81.9% | 94.9% |
| 6f0cA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 43.0 | 2.78e-01 | 95.8% | 42.0% |
| 6ks6G01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.50 | 41.0 | 2.89e-01 | 93.1% | 43.8% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3208129 | 3443.1.1.0 ↗ | alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain | 0.76 | 45.0 | 5.45e-01 | 94.4% | 100.0% |
| 3432841 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.69 | 40.0 | 3.08e-01 | 86.1% | 25.6% |
| 3687240 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 42.0 | 2.54e-01 | 81.9% | 9.5% |
| 3612587 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.62 | 39.0 | 4.26e-01 | 94.4% | 78.3% |
| None | — | 0.62 | 40.0 | 3.33e-01 | 81.9% | 35.6% | |
| 3699952 | 101.1.2.120 ↗ | alpha arrays › HTH › HTH › winged helix domain › DDRGK | 0.61 | 40.0 | 3.37e-01 | 83.3% | 36.9% |
| 3596115 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 41.0 | 3.46e-01 | 83.3% | 40.8% |
| 4030496 | 5081.1.1.2 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1 | 0.59 | 50.0 | 3.81e-01 | 100.0% | 71.6% |
| 3786716 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.57 | 39.0 | 3.34e-01 | 70.8% | 61.7% |
| 5046560 | 101.21.1.1 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N | 0.56 | 40.0 | 3.46e-01 | 77.8% | 80.8% |
| 3622106 | 109.4.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 | 0.56 | 48.0 | 2.58e-01 | 98.6% | 8.8% |
| 3743854 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.55 | 44.0 | 2.73e-01 | 91.7% | 84.8% |
| 3798382 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 47.0 | 2.56e-01 | 98.6% | 8.8% |
| 5064344 | 7584.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding | 0.54 | 39.0 | 3.11e-01 | 77.8% | 89.0% |
| 3257437 | 193.1.1.1 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH | 0.54 | 41.0 | 3.35e-01 | 83.3% | 93.8% |
| 3846614 | 109.4.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 | 0.54 | 38.0 | 2.06e-01 | 94.4% | 3.3% |
| 4972761 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 39.0 | 2.75e-01 | 77.8% | 94.1% |
| 3382585 | 109.4.1.1166 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MED33_TPR-like_mid | 0.52 | 38.0 | 2.75e-01 | 76.4% | 55.4% |
| 3429600 | 101.21.1.1 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N | 0.52 | 38.0 | 3.21e-01 | 79.2% | 69.2% |
| 3599462 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.52 | 37.0 | 2.50e-01 | 76.4% | 64.1% |
| 4469646 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.51 | 43.0 | 2.82e-01 | 94.4% | 93.5% |
| 4102860 | 4010.1.1.2 ↗ | a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 0.50 | 40.0 | 2.75e-01 | 93.1% | 77.1% |