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IMGVR_UViG_3300000160_000056-3300000160-SI48aug10_135mDRAFT_100121816
Arc-VirIMGVR_UViG_3300000160_000056-3300000160-SI48aug10_135mDRAFT_100121816
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-127
Domain cluster:
rep: IMGVR_UViG_3300033990_000272-3300033990-Ga0373184_0008483_4516_5451__D198-306
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p91A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.81 | 75.0 | 5.59e-01 | 100.0% | 43.3% |
| 2ix2B00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.81 | 77.0 | 5.74e-01 | 100.0% | 44.5% |
| 1t6lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.81 | 75.0 | 5.61e-01 | 100.0% | 44.2% |
| 1rwzA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.80 | 74.0 | 5.58e-01 | 100.0% | 44.3% |
| 1ge8A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.79 | 74.0 | 5.63e-01 | 100.0% | 46.2% |
| 1u7bA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.79 | 74.0 | 5.52e-01 | 100.0% | 44.2% |
| 1sxjH02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.79 | 74.0 | 6.96e-01 | 100.0% | 89.1% |
| 2z0lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.79 | 73.0 | 5.20e-01 | 100.0% | 43.6% |
| 8dqwG01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.78 | 73.0 | 6.12e-01 | 100.0% | 73.1% |
| 1ud9A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.78 | 73.0 | 5.49e-01 | 100.0% | 45.0% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.78 | 70.0 | 6.81e-01 | 100.0% | 87.5% |
| 1vpkA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.77 | 70.0 | 6.78e-01 | 100.0% | 89.1% |
| 5agvA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.77 | 72.0 | 6.71e-01 | 100.0% | 87.8% |
| 5wceA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.77 | 69.0 | 6.68e-01 | 100.0% | 89.1% |
| 5wceA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.75 | 69.0 | 6.52e-01 | 100.0% | 86.0% |
| 4pn0C00 | 3.20.100.10 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like | 0.57 | 44.0 | 3.38e-01 | 81.7% | 91.8% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.57 | 41.0 | 4.24e-01 | 100.0% | 79.6% |
| 2qv8A00 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.53 | 45.0 | 4.18e-01 | 95.4% | 98.6% |
| 2ffsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 33.0 | 2.99e-01 | 80.7% | 46.2% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4014655 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.82 | 77.0 | 6.92e-01 | 100.0% | 87.6% |
| 5074321 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.82 | 75.0 | 7.17e-01 | 100.0% | 85.6% |
| 3734891 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.82 | 77.0 | 6.78e-01 | 100.0% | 90.0% |
| 4939066 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.82 | 76.0 | 7.16e-01 | 100.0% | 86.8% |
| 4646871 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.82 | 76.0 | 7.27e-01 | 100.0% | 88.0% |
| 3787700 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.81 | 76.0 | 6.65e-01 | 100.0% | 93.5% |
| 143428 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.81 | 75.0 | 7.22e-01 | 100.0% | 88.3% |
| 4232371 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.81 | 76.0 | 7.36e-01 | 100.0% | 91.7% |
| 3256904 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.81 | 76.0 | 7.22e-01 | 100.0% | 92.0% |
| 4995028 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.81 | 75.0 | 7.16e-01 | 100.0% | 91.2% |
| 4660283 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.81 | 76.0 | 7.19e-01 | 100.0% | 89.6% |
| 4998585 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.80 | 73.0 | 7.09e-01 | 100.0% | 89.2% |
| 5039027 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.80 | 73.0 | 7.12e-01 | 100.0% | 90.0% |
| 5056758 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.79 | 72.0 | 7.09e-01 | 100.0% | 92.2% |
| 5029787 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.79 | 72.0 | 7.02e-01 | 100.0% | 89.2% |
| 5033948 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.79 | 74.0 | 6.95e-01 | 100.0% | 83.8% |
| 1387073 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.79 | 55.0 | 6.01e-01 | 71.6% | 95.6% |
| 3499821 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.79 | 73.0 | 6.89e-01 | 100.0% | 88.5% |
| 3251867 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.79 | 74.0 | 6.90e-01 | 100.0% | 87.7% |
| 5023031 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.78 | 73.0 | 6.95e-01 | 100.0% | 88.8% |
| 5039219 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.78 | 72.0 | 6.87e-01 | 100.0% | 87.2% |
| 4948360 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.78 | 73.0 | 6.86e-01 | 100.0% | 84.5% |
| 5028024 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.78 | 72.0 | 6.75e-01 | 100.0% | 84.6% |
| 5039026 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.78 | 68.0 | 6.56e-01 | 100.0% | 85.0% |
| 5979 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.77 | 70.0 | 6.70e-01 | 100.0% | 86.2% |
| 5990 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.77 | 69.0 | 6.68e-01 | 100.0% | 86.1% |
| 3719897 | 227.1.1.18 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C | 0.77 | 70.0 | 6.67e-01 | 99.1% | 88.0% |
| 4939065 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.76 | 68.0 | 6.63e-01 | 100.0% | 87.5% |
| 3598260 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.75 | 67.0 | 6.44e-01 | 98.2% | 92.8% |
| 2096128 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.75 | 69.0 | 6.55e-01 | 100.0% | 87.4% |
| 4336156 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.74 | 68.0 | 6.64e-01 | 100.0% | 90.8% |
| 5045499 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.69 | 30.0 | 3.81e-01 | 78.0% | 65.7% |
| 4975535 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.68 | 31.0 | 3.62e-01 | 78.9% | 58.7% |
| 3964837 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.59 | 33.0 | 3.89e-01 | 75.2% | 80.0% |
| 3633647 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.57 | 33.0 | 4.04e-01 | 93.6% | 93.8% |
| 327025 | 6048.1.1.1 ↗ | a+b two layers › DUF960-like › DUF960-like › DUF960-like › DUF960 | 0.56 | 40.0 | 4.07e-01 | 100.0% | 76.4% |
| 3839737 | 884.1.1.1 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C | 0.55 | 28.0 | 3.09e-01 | 80.7% | 57.8% |
| 5016167 | 3504.3.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N | 0.53 | 44.0 | 3.90e-01 | 94.5% | 92.4% |
| 4963965 | 873.1.1.22 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF25939 | 0.52 | 47.0 | 4.13e-01 | 99.1% | 93.8% |
| 5055184 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.52 | 31.0 | 3.47e-01 | 70.6% | 76.5% |