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IMGVR_UViG_3300000160_000168-3300000160-SI48aug10_135mDRAFT_10033792
Arc-VirIMGVR_UViG_3300000160_000168-3300000160-SI48aug10_135mDRAFT_10033792
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-152
D2
high
residues 289-382
Domain cluster:
rep: IMGVR_UViG_2529292698_000003-2529292698-2529621151__D464-562
D3
medium
residues 208-288
Domain cluster:
rep: qs_7_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00297__D771-876
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c9pA00 | 1.10.8.290 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › uncharacterized protein sp1917 domain | 0.68 | 52.0 | 4.52e-01 | 81.5% | 90.2% |
| 2hoqA02 | 1.10.150.520 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.65 | 44.0 | 4.51e-01 | 72.8% | 72.2% |
| 1b25A02 | 1.10.569.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | 0.63 | 57.0 | 4.40e-01 | 100.0% | 80.9% |
| 3b9qA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.61 | 44.0 | 4.36e-01 | 81.5% | 70.8% |
| 2ogiB00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.60 | 52.0 | 3.94e-01 | 96.3% | 76.2% |
| 2fp1B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.60 | 48.0 | 3.84e-01 | 87.7% | 83.5% |
| 3rh9A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.59 | 52.0 | 3.51e-01 | 97.5% | 69.9% |
| 5tpmB00 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.57 | 45.0 | 3.80e-01 | 86.4% | 73.0% |
| 5ts9B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.57 | 46.0 | 3.78e-01 | 91.4% | 76.4% |
| 2o5vA02 | 1.20.1050.90 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › RecF/RecN/SMC, N-terminal domain | 0.57 | 41.0 | 3.28e-01 | 77.8% | 97.7% |
| 7y7oA01 | 3.40.390.30 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › "Metalloproteases (""zincins""), catalytic domain" | 0.56 | 48.0 | 4.03e-01 | 96.3% | 76.9% |
| 2bl2A00 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.55 | 41.0 | 3.39e-01 | 80.2% | 68.6% |
| 1t33A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 39.0 | 3.15e-01 | 75.3% | 64.6% |
| 2bbwA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 38.0 | 2.90e-01 | 77.8% | 92.3% |
| 4jd9G00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.50 | 38.0 | 3.36e-01 | 80.2% | 56.7% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3206640 | 103.4.1.13 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF28365 | 0.67 | 50.0 | 4.71e-01 | 80.2% | 80.0% |
| 3737617 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.66 | 44.0 | 4.93e-01 | 92.6% | 93.3% |
| 4055 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.62 | 49.0 | 3.93e-01 | 87.7% | 86.7% |
| 3978828 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.60 | 46.0 | 3.68e-01 | 82.7% | 81.2% |
| 3061243 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.59 | 47.0 | 3.80e-01 | 87.7% | 75.0% |
| 3072969 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.58 | 46.0 | 3.83e-01 | 87.7% | 86.8% |
| 3967052 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.57 | 46.0 | 3.81e-01 | 91.4% | 87.7% |
| 1922237 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.56 | 45.0 | 3.69e-01 | 91.4% | 73.8% |
| 3288814 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.55 | 41.0 | 3.57e-01 | 82.7% | 73.3% |
| 4214737 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.55 | 42.0 | 3.40e-01 | 84.0% | 64.3% |
| 3188247 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.54 | 47.0 | 2.95e-01 | 100.0% | 26.9% |
| 4410216 | 5068.1.1.1 ↗ | alpha bundles › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Cytochrom_B_C | 0.53 | 43.0 | 3.94e-01 | 92.6% | 89.4% |
| 3703388 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.52 | 45.0 | 3.98e-01 | 100.0% | 98.4% |
| 4060748 | 3686.1.1.1 ↗ | alpha arrays › Nitrile hydratase subunit beta N-termial domain › Nitrile hydratase subunit beta N-termial domain › Nitrile hydratase subunit beta N-termial domain › NHase_beta_N | 0.52 | 43.0 | 4.14e-01 | 92.6% | 84.2% |