←Back to structures

IMGVR_UViG_3300000170_000114-3300000170-SI36aug09_135mDRAFT_100275410

Arc-Vir

IMGVR_UViG_3300000170_000114-3300000170-SI36aug09_135mDRAFT_100275410

Identity

Kingdom:
archaea

Quality

83.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-68
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.71 48.0 3.91e-01 72.0% 56.7%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.71 51.0 3.46e-01 78.0% 95.8%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.69 50.0 3.48e-01 78.0% 82.7%
4dq5B00 1.10.530.50 Mainly Alpha › Orthogonal Bundle › Lysozyme › Peptidase U40 0.66 48.0 3.31e-01 76.0% 36.3%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.66 45.0 3.68e-01 72.0% 56.1%
3q23A03 6.10.140.1360 Special › Helix non-globular › Helix Hairpins › 0.65 58.0 5.12e-01 100.0% 73.6%
2bskE00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.64 44.0 4.08e-01 72.0% 69.8%
1jx7A00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.63 41.0 3.13e-01 72.0% 28.4%
1e6cA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 52.0 3.67e-01 100.0% 84.1%
4cs9C00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.58 46.0 3.28e-01 90.0% 73.3%
2z3xA00 6.10.10.80 Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like 0.58 39.0 3.79e-01 70.0% 75.0%
5idmA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.57 42.0 2.97e-01 82.0% 80.2%
7ce1A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 38.0 3.83e-01 72.0% 76.9%
3k69A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.28e-01 98.0% 77.3%
3dliA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 46.0 3.02e-01 96.0% 32.1%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 36.0 2.85e-01 70.0% 88.4%
2xzmT00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 2.60e-01 74.0% 84.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3962074 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.78 54.0 4.67e-01 72.0% 81.3%
3286457 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.74 50.0 4.70e-01 70.0% 100.0%
3295705 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.72 47.0 3.38e-01 72.0% 24.4%
3574847 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.72 52.0 3.72e-01 78.0% 52.4%
4868770 3559.1.1.11 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Med28 0.70 48.0 3.63e-01 72.0% 45.8%
3783116 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 54.0 4.63e-01 88.0% 76.2%
3940349 109.26.1.12 ↗ alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › TPR_Nup160_C, TPR_NUP160_120_M 0.68 48.0 2.86e-01 76.0% 11.3%
5044957 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.67 52.0 4.61e-01 84.0% 61.4%
3718342 301.1.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like 0.66 46.0 3.10e-01 74.0% 94.6%
3412463 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.65 45.0 4.95e-01 74.0% 100.0%
5030507 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.65 48.0 4.04e-01 80.0% 61.9%
3598073 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 45.0 2.83e-01 74.0% 23.8%
3275917 6055.1.1.32 ↗ extended segments › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › PF29730 0.57 47.0 3.94e-01 100.0% 53.7%
3614615 1108.1.1.1 ↗ alpha complex topology › Zuotin homology domain (ZHD) › Zuotin homology domain (ZHD) › Zuotin homology domain (ZHD) › ZUO1-like_ZHD 0.55 49.0 3.57e-01 100.0% 66.4%
4036029 101.1.2.561 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28826 0.52 38.0 2.69e-01 78.0% 55.3%