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IMGVR_UViG_3300000172_000042-3300000172-SI34jun09_200mDRAFT_10018017
Arc-VirIMGVR_UViG_3300000172_000042-3300000172-SI34jun09_200mDRAFT_10018017
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-102
Domain cluster:
rep: IMGVR_UViG_3300032006_002050-3300032006-Ga0310344_100038483__D2-86
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16243.11 best | Sm_like | 31.6 | 2.00e-07 | 77.0% | 98.8% |
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3by7E00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.94 | 70.0 | 7.99e-01 | 82.0% | 100.0% |
| 3hfnA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.89 | 41.0 | 5.28e-01 | 71.0% | 75.0% |
| 4m7dA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.87 | 49.0 | 6.14e-01 | 71.0% | 87.7% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.86 | 51.0 | 6.14e-01 | 72.0% | 88.2% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.85 | 40.0 | 4.96e-01 | 71.0% | 71.2% |
| 1m5q101 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.83 | 47.0 | 5.69e-01 | 73.0% | 83.8% |
| 4f7uF00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 49.0 | 5.67e-01 | 72.0% | 82.2% |
| 4m78N00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.81 | 45.0 | 5.30e-01 | 72.0% | 77.5% |
| 4c92G00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.80 | 50.0 | 5.68e-01 | 74.0% | 84.0% |
| 2rm4A01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 46.0 | 5.63e-01 | 72.0% | 89.4% |
| 4c92F00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 50.0 | 5.68e-01 | 73.0% | 84.4% |
| 4emhA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 46.0 | 5.84e-01 | 70.0% | 98.3% |
| 1d3bC00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 46.0 | 5.37e-01 | 72.0% | 84.5% |
| 4c92A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 58.0 | 5.25e-01 | 99.0% | 60.8% |
| 3jb9F00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 46.0 | 5.03e-01 | 73.0% | 74.4% |
| 6v4xC01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 45.0 | 4.53e-01 | 72.0% | 60.0% |
| 4c92B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 46.0 | 4.55e-01 | 73.0% | 60.0% |
| 4c92C00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 46.0 | 5.20e-01 | 71.0% | 83.5% |
| 1d3bB00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 49.0 | 5.34e-01 | 80.0% | 90.1% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.65 | 42.0 | 4.34e-01 | 76.0% | 69.9% |
| 6bogA02 | 2.30.30.930 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 38.0 | 4.66e-01 | 76.0% | 96.7% |
| 2fb7A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 41.0 | 4.55e-01 | 72.0% | 87.5% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 36.0 | 4.41e-01 | 70.0% | 100.0% |
| 1pcfA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.57 | 29.0 | 3.50e-01 | 74.0% | 74.2% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 26.0 | 3.12e-01 | 88.0% | 64.8% |
| 4o4oA00 | 2.40.128.590 | Mainly Beta › Beta Barrel › Lipocalin › CpcT/CpeT domain | 0.54 | 43.0 | 3.47e-01 | 100.0% | 44.2% |
| 7k9cA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 39.0 | 4.12e-01 | 98.0% | 94.2% |
| 2v43A01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.52 | 44.0 | 3.64e-01 | 94.0% | 91.8% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.52 | 34.0 | 3.58e-01 | 99.0% | 74.2% |
| 5z5dA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 35.0 | 2.81e-01 | 71.0% | 70.4% |
| 2kdsA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 37.0 | 3.97e-01 | 100.0% | 90.7% |
| 1a1xA00 | 2.40.15.10 | Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 | 0.50 | 42.0 | 4.14e-01 | 100.0% | 86.8% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4813032 | 4.1.1.328 ↗ | beta barrels › SH3 › SH3 › SH3 › Sm_like | 0.93 | 71.0 | 7.97e-01 | 85.0% | 98.7% |
| 3602785 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.87 | 48.0 | 6.16e-01 | 73.0% | 91.7% |
| 3172870 | 4.1.1.67 ↗ | beta barrels › SH3 › SH3 › SH3 › FDF | 0.85 | 47.0 | 4.84e-01 | 72.0% | 57.9% |
| 1263519 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.85 | 41.0 | 5.15e-01 | 72.0% | 75.8% |
| 4948178 | 4.1.1.484 ↗ | beta barrels › SH3 › SH3 › SH3 › Lsm_C | 0.84 | 47.0 | 5.59e-01 | 71.0% | 80.0% |
| 3783301 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.83 | 47.0 | 4.66e-01 | 72.0% | 54.3% |
| 4934755 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.83 | 48.0 | 5.68e-01 | 73.0% | 82.9% |
| 2167708 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 45.0 | 5.55e-01 | 72.0% | 84.6% |
| 5044296 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 53.0 | 5.99e-01 | 72.0% | 84.6% |
| 3167351 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.82 | 49.0 | 5.21e-01 | 73.0% | 68.2% |
| 5042049 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 47.0 | 5.12e-01 | 73.0% | 68.2% |
| 5038431 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 45.0 | 5.30e-01 | 70.0% | 81.4% |
| 3238497 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.76 | 33.0 | 4.28e-01 | 91.0% | 70.0% |
| 4024727 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 48.0 | 4.75e-01 | 73.0% | 62.5% |
| 3699736 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 51.0 | 5.28e-01 | 71.0% | 78.7% |
| 5081091 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 53.0 | 5.51e-01 | 75.0% | 87.4% |
| 5060199 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 52.0 | 5.18e-01 | 74.0% | 87.6% |
| 4340758 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 42.0 | 5.04e-01 | 70.0% | 85.7% |
| 5069300 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.71 | 50.0 | 4.96e-01 | 73.0% | 87.6% |
| 1170462 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.70 | 30.0 | 3.80e-01 | 91.0% | 65.6% |
| 3593948 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 49.0 | 5.37e-01 | 73.0% | 85.9% |
| 3176686 | 4.1.1.81 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM14 | 0.69 | 53.0 | 5.69e-01 | 99.0% | 92.9% |
| 3555586 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.65 | 46.0 | 4.75e-01 | 73.0% | 77.9% |
| 5003274 | 4.1.1.222 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF6948 | 0.65 | 54.0 | 5.71e-01 | 98.0% | 98.9% |
| 3965254 | 4.1.1.222 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF6948 | 0.64 | 54.0 | 5.59e-01 | 96.0% | 94.7% |
| 3926207 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 33.0 | 4.20e-01 | 70.0% | 94.3% |
| 3566631 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.58 | 37.0 | 4.09e-01 | 71.0% | 80.0% |
| 4323235 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.58 | 43.0 | 4.18e-01 | 76.0% | 75.5% |
| 4279385 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.58 | 44.0 | 4.37e-01 | 100.0% | 75.2% |
| 3735831 | 9.1.1.37 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF6314 | 0.55 | 38.0 | 3.04e-01 | 71.0% | 91.5% |
| 3622366 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.54 | 28.0 | 3.66e-01 | 91.0% | 98.0% |
| 4010765 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.52 | 40.0 | 3.72e-01 | 82.0% | 98.4% |
| 3818314 | 3202.1.1.1 ↗ | a+b two layers › Alr2454 protein › Alr2454 protein › Alr2454 protein › DUF3067 | 0.52 | 43.0 | 4.32e-01 | 100.0% | 88.6% |
| 4018089 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.52 | 42.0 | 3.93e-01 | 100.0% | 71.7% |
| 4464657 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.51 | 31.0 | 3.41e-01 | 99.0% | 75.0% |
| 4978676 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.50 | 28.0 | 3.09e-01 | 78.0% | 66.3% |