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IMGVR_UViG_3300000172_000086-3300000172-SI34jun09_200mDRAFT_10022091
Arc-VirIMGVR_UViG_3300000172_000086-3300000172-SI34jun09_200mDRAFT_10022091
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-59
Domain cluster:
rep: pig_ID_3640_F65_scaffold_23_curated_prodigal-single.1__X__X__00270__D89-140
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2o0jA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.82 | 74.0 | 4.73e-01 | 98.3% | 33.9% |
| 2zhgA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.66 | 37.0 | 2.88e-01 | 100.0% | 27.3% |
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.61 | 35.0 | 3.38e-01 | 79.7% | 50.0% |
| 3ezjA03 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.60 | 30.0 | 3.15e-01 | 76.3% | 47.3% |
| 2kqrA01 | 3.30.1910.20 | Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain | 0.59 | 43.0 | 4.07e-01 | 78.0% | 93.2% |
| 1c0wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 31.0 | 2.92e-01 | 78.0% | 43.8% |
| 2rdpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 43.0 | 3.34e-01 | 84.7% | 62.1% |
| 4oo2A02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 45.0 | 3.07e-01 | 93.2% | 59.2% |
| 6psyA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.53 | 43.0 | 3.02e-01 | 98.3% | 61.2% |
| 4mloA01 | 2.60.120.810 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 36.0 | 2.73e-01 | 72.9% | 81.1% |
| 5dwzC01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 37.0 | 2.60e-01 | 76.3% | 73.2% |
| 4tv7D01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 32.0 | 2.86e-01 | 81.4% | 44.7% |
| 1yx1A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.51 | 40.0 | 2.79e-01 | 94.9% | 67.2% |
| 8gthB01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.51 | 37.0 | 3.20e-01 | 81.4% | 48.5% |
| 6hdrA01 | 3.30.10.30 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › DYRK | 0.50 | 33.0 | 3.18e-01 | 83.1% | 56.5% |
| 3krbA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.50 | 42.0 | 2.75e-01 | 96.6% | 45.9% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 317607 | 2004.1.1.99 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_6N | 0.82 | 74.0 | 4.44e-01 | 98.3% | 23.9% |
| 1230857 | 2004.1.1.99 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_6N | 0.79 | 64.0 | 4.06e-01 | 88.1% | 19.8% |
| 3640563 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.63 | 31.0 | 2.84e-01 | 81.4% | 33.3% |
| 4025596 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.62 | 31.0 | 3.10e-01 | 78.0% | 41.7% |
| 3655694 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.61 | 38.0 | 3.38e-01 | 100.0% | 44.7% |
| 3575264 | 604.12.1.61 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Clc-like | 0.58 | 43.0 | 3.40e-01 | 78.0% | 90.4% |
| 3404153 | 210.2.1.0 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain | 0.58 | 40.0 | 2.50e-01 | 74.6% | 12.1% |
| 3974474 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.58 | 39.0 | 3.42e-01 | 71.2% | 47.8% |
| 3202208 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.58 | 40.0 | 3.05e-01 | 74.6% | 42.0% |
| 4005987 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 39.0 | 3.07e-01 | 71.2% | 80.8% |
| 5077402 | 2007.15.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase | 0.57 | 47.0 | 3.43e-01 | 98.3% | 50.8% |
| 3970671 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.56 | 38.0 | 3.52e-01 | 71.2% | 60.0% |
| 3590624 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.55 | 38.0 | 3.42e-01 | 71.2% | 53.8% |
| 3948634 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 37.0 | 3.09e-01 | 71.2% | 49.5% |
| 2466758 | 4193.1.1.1 ↗ | alpha arrays › RUN domain › RUN domain › RUN domain › RUN | 0.53 | 44.0 | 3.10e-01 | 93.2% | 59.5% |
| 3253833 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 35.0 | 3.37e-01 | 76.3% | 58.6% |
| 4004773 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.51 | 35.0 | 2.92e-01 | 74.6% | 81.6% |
| 1715098 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.51 | 38.0 | 3.35e-01 | 81.4% | 61.4% |
| 4002647 | 7573.1.1.0 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like | 0.50 | 38.0 | 3.01e-01 | 86.4% | 37.0% |
| 4573073 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.50 | 41.0 | 3.26e-01 | 86.4% | 50.0% |
D2
medium
residues 60-173
Domain cluster:
rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03237.22 best | Terminase_6N | 30.4 | 4.20e-07 | 100.0% | 54.4% |