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IMGVR_UViG_3300000172_000217-3300000172-SI34jun09_200mDRAFT_10055023
Arc-VirIMGVR_UViG_3300000172_000217-3300000172-SI34jun09_200mDRAFT_10055023
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-160
Domain cluster:
rep: OR050627.1__WIC41470.1__MA9V1_206__00206__D10-156
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03013.20 best | Pyr_excise | 23.6 | 7.40e-05 | 60.8% | 84.0% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yhlA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.59 | 45.0 | 3.47e-01 | 79.7% | 75.1% |
| 2l1lB00 | 1.20.1440.250 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.56 | 32.0 | 3.54e-01 | 71.5% | 67.7% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 22.0 | 3.00e-01 | 80.4% | 69.9% |
| 1h54A02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.53 | 47.0 | 3.63e-01 | 98.7% | 88.6% |
| 4okmD00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 39.0 | 3.10e-01 | 86.7% | 39.0% |
| 2vs0A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.52 | 26.0 | 3.51e-01 | 85.4% | 91.5% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5015832 | 615.1.1.0 ↗ | alpha arrays › T4 endonuclease V › T4 endonuclease V › T4 endonuclease V | 0.95 | 81.0 | 8.68e-01 | 100.0% | 98.6% |
| 3272466 | 615.1.1.1 ↗ | alpha arrays › T4 endonuclease V › T4 endonuclease V › T4 endonuclease V › Pyr_excise | 0.92 | 70.0 | 7.91e-01 | 89.9% | 98.4% |
| 5040981 | 615.1.1.0 ↗ | alpha arrays › T4 endonuclease V › T4 endonuclease V › T4 endonuclease V | 0.90 | 86.0 | 8.60e-01 | 100.0% | 98.1% |
| 4990364 | 615.1.1.1 ↗ | alpha arrays › T4 endonuclease V › T4 endonuclease V › T4 endonuclease V › Pyr_excise | 0.80 | 67.0 | 6.98e-01 | 100.0% | 95.1% |
| 3668384 | 109.4.1.418 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Condensin2nSMC | 0.61 | 43.0 | 2.72e-01 | 71.5% | 14.9% |
| 4028947 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 34.0 | 3.14e-01 | 70.3% | 48.1% |