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IMGVR_UViG_3300000192_000068-3300000192-SI60aug11_100mDRAFT_100221810

Arc-Vir

IMGVR_UViG_3300000192_000068-3300000192-SI60aug11_100mDRAFT_100221810

Quality

84.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-63_210-227
PDB
Domain cluster: representative
CATH (72)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.92 52.0 6.28e-01 94.6% 84.3%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 45.0 5.22e-01 91.9% 72.2%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 55.0 5.80e-01 95.9% 77.3%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.81 45.0 5.82e-01 91.9% 100.0%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.81 59.0 3.96e-01 75.7% 42.2%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 50.0 5.91e-01 87.8% 98.0%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 51.0 5.77e-01 73.0% 91.1%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 50.0 5.28e-01 85.1% 76.1%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 49.0 5.25e-01 75.7% 76.9%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 47.0 5.41e-01 70.3% 87.3%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 44.0 4.84e-01 87.8% 75.4%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 49.0 4.57e-01 75.7% 56.4%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 50.0 5.78e-01 77.0% 100.0%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 46.0 5.23e-01 85.1% 90.7%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 52.0 3.46e-01 77.0% 90.3%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 50.0 5.57e-01 79.7% 100.0%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 5.63e-01 89.2% 100.0%
1xd7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 58.0 4.99e-01 94.6% 64.7%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 5.15e-01 86.5% 86.9%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 4.06e-01 81.1% 48.6%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 5.17e-01 74.3% 94.8%
2p8tA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 58.0 5.78e-01 95.9% 100.0%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 51.0 3.64e-01 87.8% 29.6%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 4.99e-01 86.5% 81.9%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 3.99e-01 83.8% 57.0%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 4.88e-01 87.8% 76.2%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 5.26e-01 91.9% 92.5%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.79e-01 89.2% 77.6%
2y75A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 56.0 4.75e-01 98.6% 63.2%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.63 57.0 5.21e-01 100.0% 78.4%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.77e-01 79.7% 81.3%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 5.42e-01 83.8% 100.0%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 5.26e-01 89.2% 98.4%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.53e-01 79.7% 81.2%
3nxcA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 43.0 3.30e-01 81.1% 30.5%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 55.0 4.89e-01 97.3% 76.0%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.62 47.0 3.88e-01 79.7% 49.6%
2wteA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 5.45e-01 93.2% 98.6%
4yifF00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 4.19e-01 89.2% 53.1%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.52e-01 83.8% 70.1%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 4.22e-01 89.2% 55.8%
8ex5A01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.62 45.0 3.43e-01 79.7% 90.6%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.63e-01 87.8% 77.7%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.13e-01 90.5% 48.6%
3oopA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.12e-01 89.2% 52.2%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 5.28e-01 86.5% 100.0%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 53.0 4.36e-01 94.6% 81.4%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.29e-01 93.2% 54.8%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 5.08e-01 91.9% 95.5%
4fx0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 48.0 4.06e-01 86.5% 59.8%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 50.0 3.98e-01 89.2% 52.5%
1b9mB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 48.0 4.41e-01 89.2% 71.7%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.06e-01 93.2% 52.8%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 47.0 3.54e-01 86.5% 57.0%
3bddD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 4.14e-01 93.2% 57.6%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.59 52.0 4.34e-01 97.3% 92.9%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.73e-01 91.9% 97.5%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 4.37e-01 89.2% 80.0%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 4.38e-01 89.2% 78.7%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 39.0 3.71e-01 86.5% 59.8%
3hhgE01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 4.37e-01 89.2% 81.8%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 49.0 3.66e-01 100.0% 66.3%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.33e-01 89.2% 83.0%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 3.70e-01 90.5% 44.4%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.56 39.0 3.67e-01 71.6% 70.0%
3npiB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 45.0 3.27e-01 90.5% 55.7%
5k3hB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 39.0 3.28e-01 75.7% 94.0%
7lwzB01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.55 39.0 2.94e-01 75.7% 88.3%
2qwtA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 45.0 3.52e-01 93.2% 68.9%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.54 38.0 3.67e-01 71.6% 93.8%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 4.15e-01 89.2% 79.8%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 4.11e-01 87.8% 79.5%
ECOD (88)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963536 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.92 80.0 6.75e-01 91.9% 98.3%
3963336 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.92 80.0 5.51e-01 91.9% 99.1%
3964524 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.92 80.0 5.84e-01 91.9% 98.9%
3964882 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.91 79.0 6.29e-01 91.9% 98.5%
3964047 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.90 78.0 6.70e-01 91.9% 98.2%
3589359 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.89 48.0 6.32e-01 94.6% 100.0%
3797530 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.88 71.0 7.58e-01 95.9% 96.9%
5021231 101.1.1.544 alpha arrays › HTH › HTH › Three-helical HTH › DUF1670 0.86 63.0 5.97e-01 75.7% 89.4%
5017723 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 61.0 6.08e-01 73.0% 72.0%
3576503 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 77.0 6.52e-01 95.9% 63.5%
3410877 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 56.0 5.78e-01 94.6% 71.4%
4979402 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.84 53.0 5.91e-01 83.8% 80.0%
5038587 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.84 53.0 5.84e-01 93.2% 80.0%
1035813 101.1.6.2 alpha arrays › HTH › HTH › TrpR › HTH_7 0.83 51.0 5.99e-01 81.1% 88.5%
3789627 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 56.0 5.93e-01 95.9% 78.5%
3990848 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 52.0 5.97e-01 81.1% 85.5%
5028266 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 53.0 5.94e-01 98.6% 83.1%
3707219 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.81 55.0 4.59e-01 70.3% 70.0%
3706139 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 53.0 6.34e-01 100.0% 100.0%
3615077 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 53.0 5.27e-01 98.6% 66.7%
3701286 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.80 52.0 6.29e-01 94.6% 100.0%
3985633 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.79 56.0 6.37e-01 79.7% 98.2%
3544647 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.79 53.0 5.62e-01 91.9% 78.5%
5062184 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.77 49.0 5.38e-01 87.8% 80.0%
3401087 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.76 49.0 5.79e-01 93.2% 98.0%
4060647 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.76 61.0 6.47e-01 93.2% 98.5%
4976345 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.76 51.0 5.60e-01 70.3% 86.7%
4973199 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.75 51.0 5.66e-01 74.3% 86.7%
4280807 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.75 52.0 5.98e-01 94.6% 96.4%
5024511 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 44.0 5.10e-01 93.2% 86.0%
5056682 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 57.0 5.84e-01 89.2% 85.7%
4937081 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 50.0 5.34e-01 75.7% 80.0%
3693390 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.74 51.0 5.60e-01 77.0% 88.3%
3404418 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.73 51.0 5.31e-01 91.9% 77.1%
3603167 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.72 53.0 5.61e-01 75.7% 86.2%
4958468 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.72 54.0 5.84e-01 79.7% 100.0%
5057202 101.1.3.8 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Sigma70_r4_2 0.72 53.0 5.46e-01 86.5% 82.9%
3955987 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.72 48.0 4.39e-01 75.7% 53.7%
3509240 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.71 47.0 4.98e-01 91.9% 76.9%
3998880 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 64.0 5.88e-01 100.0% 78.9%
4133358 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 44.0 3.40e-01 78.4% 30.3%
3857628 101.1.3.29 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › CENP-B_N 0.69 44.0 4.69e-01 93.2% 73.8%
3289034 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.69 55.0 5.91e-01 91.9% 98.4%
3873677 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.68 48.0 4.93e-01 91.9% 77.1%
4197050 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.68 50.0 4.45e-01 78.4% 63.8%
3191582 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.68 51.0 4.30e-01 82.4% 97.7%
4533441 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.67 51.0 4.65e-01 79.7% 68.4%
4106860 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.67 49.0 4.52e-01 77.0% 70.5%
4131887 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 50.0 4.92e-01 78.4% 75.9%
4241531 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 51.0 5.22e-01 79.7% 84.3%
4347676 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.67 51.0 4.77e-01 81.1% 72.2%
5061884 101.1.2.887 alpha arrays › HTH › HTH › winged helix domain › DUF1670 0.66 56.0 4.33e-01 91.9% 49.4%
4968499 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.66 53.0 5.22e-01 86.5% 88.7%
4939633 101.1.2.932 alpha arrays › HTH › HTH › winged helix domain › wHTH-PRTase_assc 0.66 51.0 5.51e-01 91.9% 96.8%
4973961 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 5.05e-01 89.2% 78.9%
3962552 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.66 50.0 5.05e-01 86.5% 80.0%
3476699 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.66 50.0 4.74e-01 94.6% 69.4%
3396556 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.65 52.0 4.41e-01 87.8% 73.6%
3807056 101.1.2.361 alpha arrays › HTH › HTH › winged helix domain › Myb_DNA-binding 0.65 53.0 4.49e-01 87.8% 74.2%
3962431 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.65 51.0 5.12e-01 87.8% 82.7%
4969699 101.1.6.40 alpha arrays › HTH › HTH › TrpR › DUF1670 0.65 57.0 5.56e-01 95.9% 90.0%
3972272 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.65 50.0 5.03e-01 91.9% 81.3%
4059731 101.1.1.64 alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.65 45.0 4.02e-01 75.7% 50.5%
3966025 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.64 50.0 5.08e-01 89.2% 83.8%
2475319 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.64 50.0 5.26e-01 91.9% 92.5%
4661582 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.64 50.0 4.39e-01 91.9% 56.4%
3954318 101.1.1.300 alpha arrays › HTH › HTH › Three-helical HTH › HTH_30 0.64 50.0 4.68e-01 90.5% 68.9%
3953111 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.64 51.0 5.25e-01 86.5% 94.3%
3589192 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.63 56.0 5.50e-01 95.9% 91.3%
3279743 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.63 51.0 5.25e-01 87.8% 94.3%
4321251 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.63 51.0 4.98e-01 91.9% 81.0%
5021422 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.63 51.0 5.39e-01 93.2% 100.0%
3971977 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.63 51.0 5.01e-01 87.8% 83.7%
3283604 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.63 51.0 4.62e-01 89.2% 68.0%
4071326 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.62 49.0 4.85e-01 89.2% 78.8%
5060354 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 5.22e-01 89.2% 96.9%
3944331 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.62 49.0 4.82e-01 93.2% 78.8%
3976103 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.62 48.0 5.14e-01 85.1% 96.9%
3946248 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.62 50.0 4.56e-01 89.2% 68.0%
3286659 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.61 49.0 5.04e-01 89.2% 91.4%
3976506 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.60 47.0 4.73e-01 89.2% 82.7%
3783362 2004.1.1.455 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 0.60 53.0 3.09e-01 100.0% 43.3%
3948900 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.59 49.0 4.90e-01 93.2% 88.0%
3166394 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.59 48.0 4.34e-01 89.2% 75.0%
3946548 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.58 47.0 4.47e-01 89.2% 77.8%
5047085 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 50.0 4.94e-01 93.2% 88.7%
3289886 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.58 46.0 4.15e-01 87.8% 64.8%
4002185 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.56 49.0 4.90e-01 95.9% 96.0%
D2 high residues 70-208
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12762.14 best DDE_Tnp_IS1595 88.5 6.40e-25 99.3% 96.7%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.79 68.0 6.60e-01 100.0% 82.9%
7ue1B01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.79 68.0 6.74e-01 100.0% 87.5%
5cr4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.78 74.0 6.16e-01 100.0% 73.7%
3op2A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.69 33.0 3.39e-01 98.6% 47.0%
4py5A02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.67 56.0 4.94e-01 88.5% 82.1%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.66 32.0 3.48e-01 99.3% 53.8%
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 33.0 3.58e-01 100.0% 58.1%
3bjsA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 32.0 3.51e-01 100.0% 62.4%
3okpA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.59 42.0 3.75e-01 71.9% 95.8%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 30.0 3.11e-01 98.6% 48.9%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 30.0 3.29e-01 98.6% 58.6%
3ttcA03 3.30.420.360 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.57 37.0 4.01e-01 77.0% 76.0%
3n28A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 40.0 3.86e-01 71.9% 89.6%
3rpcA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 44.0 3.56e-01 81.3% 96.6%
4ifeA02 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.54 48.0 4.09e-01 98.6% 70.0%
3o3mD03 3.40.50.11900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 37.0 3.71e-01 71.9% 92.5%
1wn1A01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.52 39.0 4.07e-01 78.4% 89.1%
1zkpC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 46.0 3.84e-01 98.6% 98.8%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3938498 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.90 62.0 7.50e-01 77.7% 100.0%
4929448 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.89 79.0 7.83e-01 100.0% 88.3%
3924799 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.88 85.0 7.99e-01 100.0% 86.9%
4210484 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.88 83.0 7.71e-01 100.0% 90.6%
3902211 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.85 82.0 6.61e-01 100.0% 62.1%
3927388 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.85 81.0 7.59e-01 100.0% 84.2%
3964524 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.83 56.0 5.17e-01 100.0% 54.9%
4952918 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.80 48.0 5.96e-01 72.7% 93.3%
4958309 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.79 75.0 6.43e-01 100.0% 91.7%
5039143 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.79 62.0 6.64e-01 93.5% 93.3%
4929499 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.78 71.0 6.71e-01 100.0% 82.5%
4959188 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.77 73.0 6.35e-01 100.0% 86.5%
3963336 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.77 71.0 6.04e-01 100.0% 63.3%
5008723 2484.1.1.66 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.76 72.0 6.62e-01 100.0% 85.1%
3563980 2484.1.1.104 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_1 0.75 71.0 5.52e-01 100.0% 69.3%
4966214 2484.1.1.66 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.75 71.0 5.94e-01 100.0% 66.7%
4643206 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.75 70.0 6.37e-01 100.0% 80.0%
4986795 2484.1.1.66 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.75 70.0 6.60e-01 100.0% 87.9%
3787139 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 68.0 6.26e-01 100.0% 77.7%
3963585 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 51.0 5.73e-01 74.1% 95.2%
3964071 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.70 49.0 5.54e-01 74.1% 95.2%
5031294 2484.1.1.22 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.70 55.0 4.97e-01 82.7% 97.3%
3989984 2484.1.1.66 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.65 56.0 5.87e-01 97.8% 100.0%
3838396 2484.1.1.16 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII 0.64 54.0 4.77e-01 88.5% 90.8%
3224865 2484.1.1.26 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.64 58.0 4.73e-01 100.0% 95.5%
3452542 3407.1.1.0 mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.62 44.0 5.05e-01 81.3% 96.2%
4569359 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.62 29.0 3.67e-01 99.3% 71.8%
165020 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.62 31.0 3.25e-01 98.6% 50.0%
4060677 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 39.0 4.64e-01 98.6% 96.7%
4334767 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.60 31.0 3.64e-01 100.0% 70.5%
1242000 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.59 32.0 3.38e-01 100.0% 57.5%
4959670 2484.4.1.1 mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co 0.59 41.0 4.61e-01 71.9% 96.4%
5062114 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 42.0 4.39e-01 96.4% 80.8%
4976249 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 43.0 4.64e-01 98.6% 92.2%
4957867 2484.4.1.1 mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co 0.57 40.0 4.45e-01 71.9% 92.7%
4057216 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.57 41.0 4.48e-01 77.0% 92.7%
4229347 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.56 40.0 4.40e-01 77.0% 92.7%
3247128 2484.1.1.190 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.55 38.0 3.09e-01 70.5% 61.6%
4997175 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.53 29.0 3.25e-01 99.3% 66.4%
3220244 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.52 36.0 3.37e-01 71.9% 71.1%
4971078 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.52 36.0 3.44e-01 71.9% 85.9%
3214923 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.52 37.0 3.32e-01 73.4% 81.0%
3216450 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.52 37.0 3.61e-01 72.7% 90.7%