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IMGVR_UViG_3300000193_000129-3300000193-SI47jul10_135mDRAFT_10019253
Arc-VirIMGVR_UViG_3300000193_000129-3300000193-SI47jul10_135mDRAFT_10019253
Identity
- Kingdom:
- archaea
Quality
82.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 43-114
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cklA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.65 | 39.0 | 3.51e-01 | 93.1% | 42.9% |
D2
medium
residues 115-175
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 62.0 | 4.60e-01 | 100.0% | 57.4% |
| 1wp1B01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.65 | 55.0 | 3.46e-01 | 100.0% | 16.9% |
| 2zw3A00 | 1.20.1440.80 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain | 0.64 | 57.0 | 3.93e-01 | 100.0% | 29.9% |
| 3ed3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.63 | 35.0 | 2.78e-01 | 93.4% | 26.4% |
| 2felA00 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.62 | 56.0 | 3.47e-01 | 100.0% | 18.4% |
| 3mk7C01 | 6.10.280.130 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 54.0 | 4.70e-01 | 100.0% | 89.4% |
| 4fxdA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.61 | 43.0 | 3.32e-01 | 100.0% | 30.7% |
| 2yt4A03 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 31.0 | 2.62e-01 | 78.7% | 26.9% |
| 2vs7A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.60 | 32.0 | 2.99e-01 | 93.4% | 38.5% |
| 2ethA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 43.0 | 3.33e-01 | 77.0% | 58.2% |
| 3zqmA00 | 6.10.140.2160 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 46.0 | 4.74e-01 | 86.9% | 86.4% |
| 1qlbA04 | 3.10.20.820 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 42.0 | 3.72e-01 | 77.0% | 72.3% |
| 7wu7501 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 52.0 | 4.12e-01 | 100.0% | 88.1% |
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 51.0 | 3.47e-01 | 100.0% | 67.1% |
| 5e1wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 44.0 | 3.27e-01 | 88.5% | 49.4% |
| 1p4xA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 49.0 | 3.91e-01 | 100.0% | 84.3% |
| 3ckjA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.55 | 39.0 | 2.51e-01 | 75.4% | 39.7% |
| 6gmhK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.54 | 46.0 | 3.73e-01 | 93.4% | 53.0% |
| 7x4lC02 | 3.90.1150.160 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.53 | 47.0 | 3.65e-01 | 100.0% | 46.1% |
| 1p4xA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 47.0 | 3.76e-01 | 100.0% | 78.9% |
| 4rs1A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 47.0 | 3.92e-01 | 98.4% | 69.5% |
| 2ywqA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.52 | 40.0 | 3.54e-01 | 82.0% | 59.1% |
| 3b8oA01 | 3.30.1890.10 | Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like | 0.52 | 47.0 | 3.19e-01 | 100.0% | 39.5% |
| 7mi4A01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.52 | 45.0 | 3.16e-01 | 96.7% | 84.6% |
| 2p92A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.52 | 47.0 | 4.02e-01 | 100.0% | 65.3% |
| 1rh5A00 | 1.10.3370.10 | Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain | 0.51 | 40.0 | 2.56e-01 | 95.1% | 80.0% |
| 3bzvB00 | 3.40.1690.10 | Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU | 0.51 | 32.0 | 2.99e-01 | 100.0% | 48.8% |
| 3ke2B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 34.0 | 3.06e-01 | 72.1% | 80.2% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4651132 | 109.4.1.1297 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 | 0.71 | 51.0 | 2.88e-01 | 100.0% | 7.1% |
| 4933816 | 5069.1.2.1 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Respiratory nitrate reductase 1 gamma chain › Nitrate_red_gam | 0.71 | 52.0 | 3.71e-01 | 100.0% | 26.7% |
| 4023956 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.71 | 52.0 | 4.04e-01 | 100.0% | 36.9% |
| 2850105 | 304.48.1.19 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Bunya_RdRp | 0.70 | 47.0 | 3.08e-01 | 70.5% | 71.8% |
| 5053229 | 2004.1.1.119 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA | 0.69 | 41.0 | 3.05e-01 | 100.0% | 24.7% |
| 4987009 | 3837.1.1.1 ↗ | alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 | 0.68 | 58.0 | 4.45e-01 | 100.0% | 42.7% |
| 3396714 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.66 | 60.0 | 4.50e-01 | 100.0% | 67.6% |
| 5008906 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.66 | 60.0 | 4.46e-01 | 100.0% | 76.6% |
| 4494181 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.65 | 59.0 | 4.45e-01 | 100.0% | 76.6% |
| 3691694 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.65 | 59.0 | 4.60e-01 | 100.0% | 64.0% |
| 3954143 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.64 | 31.0 | 2.25e-01 | 75.4% | 16.0% |
| 3287687 | 633.23.1.7 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › DUF5336 | 0.64 | 52.0 | 4.33e-01 | 98.4% | 52.8% |
| 3163632 | 3313.1.1.1 ↗ | a+b two layers › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › DUF406 | 0.63 | 36.0 | 3.26e-01 | 91.8% | 41.2% |
| 3499265 | 3542.1.1.3 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B | 0.62 | 49.0 | 3.17e-01 | 91.8% | 76.4% |
| 3771953 | 109.4.1.839 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Maestro_HEAT | 0.62 | 39.0 | 2.55e-01 | 100.0% | 13.7% |
| 4995788 | 3218.1.1.0 ↗ | a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain | 0.60 | 47.0 | 4.99e-01 | 91.8% | 100.0% |
| 5065308 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.60 | 52.0 | 4.10e-01 | 95.1% | 89.2% |
| 3210245 | 192.8.1.342 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PHM7_cyt | 0.59 | 49.0 | 4.46e-01 | 88.5% | 87.5% |
| 1033457 | 3218.1.1.0 ↗ | a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain | 0.59 | 46.0 | 4.70e-01 | 86.9% | 87.9% |
| 3949260 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.59 | 52.0 | 4.29e-01 | 100.0% | 100.0% |
| 1834407 | 3218.1.1.1 ↗ | a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain › Terminase_2 | 0.58 | 47.0 | 4.37e-01 | 91.8% | 69.2% |
| 4250649 | 331.3.1.50 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF29358 | 0.58 | 47.0 | 3.52e-01 | 91.8% | 71.5% |
| 3775055 | 5051.1.1.1 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF | 0.58 | 50.0 | 2.89e-01 | 96.7% | 42.5% |
| 4026519 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.58 | 50.0 | 3.93e-01 | 100.0% | 45.2% |
| 4571673 | 331.22.1.2 ↗ | a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 | 0.58 | 47.0 | 3.44e-01 | 91.8% | 64.4% |
| 3755628 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.58 | 48.0 | 3.23e-01 | 100.0% | 81.9% |
| 3964460 | 331.4.1.31 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › PF29358 | 0.57 | 47.0 | 3.55e-01 | 91.8% | 76.1% |
| 5077859 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.57 | 50.0 | 3.23e-01 | 98.4% | 32.3% |
| 3326012 | 192.8.1.342 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PHM7_cyt | 0.57 | 49.0 | 4.54e-01 | 100.0% | 100.0% |
| 4682218 | 3382.1.1.1 ↗ | alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt | 0.56 | 46.0 | 2.88e-01 | 90.2% | 19.5% |
| 4990676 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.56 | 45.0 | 3.68e-01 | 86.9% | 93.6% |
| 4654143 | 109.4.1.839 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Maestro_HEAT | 0.56 | 49.0 | 2.84e-01 | 96.7% | 11.3% |
| 3786566 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.56 | 50.0 | 3.61e-01 | 100.0% | 39.4% |
| 3597121 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 46.0 | 3.05e-01 | 100.0% | 35.9% |
| 3785655 | 109.26.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | 0.55 | 50.0 | 3.51e-01 | 100.0% | 36.6% |
| 3487129 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.54 | 48.0 | 4.17e-01 | 96.7% | 73.3% |
| 3983642 | 220.1.1.73 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF3461 | 0.54 | 36.0 | 3.27e-01 | 85.2% | 46.7% |
| 3389720 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.54 | 48.0 | 2.91e-01 | 100.0% | 49.8% |
| 3170708 | 632.1.1.6 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Pho88 | 0.54 | 46.0 | 3.52e-01 | 100.0% | 40.7% |
| 3684539 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.54 | 42.0 | 2.86e-01 | 90.2% | 22.6% |
| 3695812 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.54 | 48.0 | 3.19e-01 | 100.0% | 57.6% |
| 3169426 | 109.26.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C | 0.54 | 45.0 | 2.54e-01 | 95.1% | 8.2% |
| 3434157 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.54 | 48.0 | 3.66e-01 | 100.0% | 45.4% |
| 5050129 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.53 | 42.0 | 3.44e-01 | 85.2% | 92.7% |
| 3294223 | 304.9.1.47 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4283 | 0.53 | 29.0 | 2.81e-01 | 75.4% | 41.4% |
| 3735521 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 47.0 | 3.60e-01 | 100.0% | 43.7% |
| 4664503 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 47.0 | 3.84e-01 | 100.0% | 53.6% |
| 4061057 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.53 | 45.0 | 3.97e-01 | 95.1% | 70.0% |
| 3413847 | 109.4.1.1289 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30856 | 0.53 | 41.0 | 2.42e-01 | 95.1% | 12.0% |
| 4965888 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.53 | 44.0 | 4.06e-01 | 100.0% | 71.2% |
| 4172605 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.52 | 47.0 | 4.07e-01 | 100.0% | 74.7% |
| 3916934 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.52 | 38.0 | 3.38e-01 | 77.0% | 100.0% |
| 3276304 | 109.4.1.1378 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2428, TPR_Trm732_C | 0.52 | 42.0 | 2.47e-01 | 100.0% | 9.8% |
| 3253762 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 44.0 | 4.02e-01 | 95.1% | 80.0% |
| 3108097 | 3382.1.1.0 ↗ | alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 | 0.51 | 43.0 | 2.79e-01 | 96.7% | 38.2% |
| 3734132 | 3542.1.1.3 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B | 0.51 | 43.0 | 2.77e-01 | 100.0% | 19.4% |