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IMGVR_UViG_3300000193_000137-3300000193-SI47jul10_135mDRAFT_100342812

Arc-Vir

IMGVR_UViG_3300000193_000137-3300000193-SI47jul10_135mDRAFT_100342812

Quality

77.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-86
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y0gA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.68 60.0 4.67e-01 100.0% 96.4%
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 36.0 3.07e-01 93.4% 30.7%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 47.0 3.81e-01 73.7% 77.1%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.05e-01 98.7% 83.3%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.64 42.0 4.66e-01 92.1% 86.2%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 45.0 3.46e-01 73.7% 72.0%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.64 47.0 5.14e-01 98.7% 95.2%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.63 44.0 3.61e-01 100.0% 39.9%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.60 45.0 4.82e-01 90.8% 92.2%
6j0qA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.60 43.0 3.84e-01 98.7% 52.3%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 50.0 3.90e-01 98.7% 41.6%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.60 49.0 4.43e-01 92.1% 69.2%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 42.0 3.79e-01 92.1% 55.4%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 52.0 3.26e-01 97.4% 26.4%
5iz3A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.58 42.0 3.23e-01 76.3% 97.1%
2ovsA00 2.40.128.380 Mainly Beta › Beta Barrel › Lipocalin › T3SS negative regulator GrlR 0.57 49.0 4.33e-01 98.7% 88.1%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.57 43.0 4.06e-01 97.4% 66.3%
4hltA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 32.0 2.50e-01 96.1% 25.8%
3alfA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 45.0 4.64e-01 86.8% 100.0%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 49.0 3.80e-01 97.4% 80.1%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 47.0 4.13e-01 93.4% 81.6%
8an5A01 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.56 42.0 3.13e-01 80.3% 59.9%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 50.0 3.97e-01 98.7% 87.1%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.55 49.0 4.72e-01 98.7% 90.9%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 48.0 3.99e-01 93.4% 82.7%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 49.0 3.87e-01 97.4% 59.7%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.55 40.0 3.11e-01 77.6% 73.8%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.55 46.0 3.39e-01 100.0% 47.7%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 48.0 3.89e-01 97.4% 88.7%
1gkaB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 46.0 3.65e-01 98.7% 47.1%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 4.22e-01 100.0% 90.9%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 48.0 3.81e-01 97.4% 84.1%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 48.0 3.51e-01 96.1% 72.8%
4jp0A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 45.0 3.79e-01 97.4% 97.2%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.54 39.0 3.91e-01 80.3% 76.8%
2lf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 42.0 3.30e-01 86.8% 46.9%
2wzpP03 2.60.120.880 Mainly Beta › Sandwich › Jelly Rolls › 0.54 37.0 3.26e-01 75.0% 47.2%
3pjyA00 2.60.120.1140 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 0.53 44.0 3.76e-01 94.7% 96.1%
7t2sA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 39.0 3.07e-01 80.3% 56.6%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 39.0 3.54e-01 80.3% 89.5%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 46.0 3.83e-01 96.1% 83.6%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 47.0 3.64e-01 98.7% 61.0%
1khbA03 3.90.228.20 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.52 42.0 2.86e-01 98.7% 25.2%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 43.0 3.56e-01 94.7% 51.9%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 42.0 3.34e-01 92.1% 74.1%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.51 42.0 3.04e-01 98.7% 49.0%
7e52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 42.0 3.58e-01 93.4% 96.1%
1xf1A02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.50 42.0 3.37e-01 92.1% 82.4%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 36.0 3.27e-01 88.2% 55.8%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 44.0 3.91e-01 96.1% 75.5%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3713334 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.79 54.0 6.07e-01 93.4% 90.0%
4026274 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 54.0 4.37e-01 92.1% 39.3%
3812766 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 53.0 5.57e-01 92.1% 85.7%
3608562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 47.0 3.66e-01 93.4% 34.0%
3276425 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.66 45.0 3.06e-01 71.1% 32.3%
4383895 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 53.0 3.50e-01 92.1% 26.1%
3280641 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 43.0 3.94e-01 93.4% 55.0%
3944005 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.62 45.0 3.72e-01 97.4% 43.6%
3172266 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 53.0 3.42e-01 94.7% 36.6%
4073608 1.1.5.57 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.62 55.0 4.17e-01 100.0% 76.1%
3545090 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.61 46.0 3.30e-01 94.7% 27.7%
3948209 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.46e-01 98.7% 77.3%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.61 42.0 4.48e-01 93.4% 84.6%
3670468 4.1.1.332 beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.60 52.0 4.34e-01 97.4% 55.4%
3765005 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 53.0 3.09e-01 100.0% 12.7%
3771406 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 53.0 4.54e-01 100.0% 85.6%
3511356 4056.1.1.1 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.60 53.0 4.76e-01 98.7% 96.2%
5024617 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.60 45.0 4.27e-01 97.4% 66.3%
4425420 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 47.0 4.59e-01 94.7% 76.5%
3781471 220.1.1.169 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_26 0.60 51.0 4.02e-01 100.0% 70.3%
3700781 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.58 43.0 3.69e-01 88.2% 46.9%
3624726 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 48.0 3.16e-01 92.1% 27.2%
4152374 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 46.0 4.51e-01 93.4% 77.4%
3273347 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.58 47.0 3.96e-01 94.7% 91.0%
3212698 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 49.0 3.79e-01 100.0% 68.3%
3278636 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.56 49.0 3.89e-01 96.1% 78.7%
4387111 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 45.0 4.43e-01 93.4% 81.2%
3614740 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.56 42.0 3.56e-01 88.2% 46.9%
4505054 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.56 50.0 3.83e-01 97.4% 80.0%
3218206 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 46.0 3.54e-01 93.4% 69.4%
4318524 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.54 48.0 3.71e-01 97.4% 78.8%
3672433 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.54 39.0 2.62e-01 94.7% 20.0%
3283078 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.54 48.0 3.77e-01 96.1% 87.9%
3791433 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.54 40.0 2.75e-01 81.6% 27.2%
3240335 1.1.5.49 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.53 46.0 3.22e-01 98.7% 34.6%
3772106 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.53 46.0 3.30e-01 96.1% 37.8%
3783835 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.53 48.0 3.29e-01 100.0% 32.8%
3236876 1.1.5.49 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.53 46.0 3.14e-01 96.1% 32.5%
3447254 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.53 47.0 3.40e-01 100.0% 43.6%
5048078 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 47.0 3.54e-01 97.4% 70.9%
3894729 4.1.1.461 beta barrels › SH3 › SH3 › SH3 › zf-CCCH 0.53 44.0 4.21e-01 93.4% 86.7%
4462290 1.1.7.79 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND 0.53 40.0 3.67e-01 93.4% 62.0%
3523462 2487.1.1.7 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.53 46.0 3.69e-01 97.4% 98.0%
3542453 11.1.1.54 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.53 38.0 3.32e-01 97.4% 47.2%
3439294 11.2.1.37 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 0.53 42.0 3.50e-01 90.8% 70.3%
2841855 265.1.1.1 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.53 43.0 3.63e-01 98.7% 98.7%
1217791 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.53 46.0 3.54e-01 97.4% 73.7%
4530545 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.52 44.0 4.10e-01 93.4% 81.1%
4114383 4.8.1.47 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › zf_CCCH_4 0.52 43.0 4.24e-01 93.4% 91.8%
5067070 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.52 46.0 3.75e-01 97.4% 90.0%
3237970 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.32e-01 81.6% 80.0%
3997886 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.51 47.0 3.32e-01 100.0% 43.5%
3190386 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.51 38.0 2.79e-01 80.3% 80.9%
4015954 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 38.0 2.81e-01 81.6% 80.9%
None 0.50 38.0 2.57e-01 81.6% 58.9%
4512371 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.50 44.0 3.46e-01 97.4% 80.6%