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IMGVR_UViG_3300000195_000048-3300000195-SI39nov08_150mDRAFT_100027821
Arc-VirIMGVR_UViG_3300000195_000048-3300000195-SI39nov08_150mDRAFT_100027821
Identity
- Kingdom:
- archaea
Quality
85.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-68
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kf6A04 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.64 | 31.0 | 3.86e-01 | 82.8% | 80.0% |
| 2jz6A01 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.62 | 39.0 | 4.26e-01 | 93.8% | 82.0% |
| 5hmaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 42.0 | 3.59e-01 | 75.0% | 78.8% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 45.0 | 3.80e-01 | 89.1% | 83.8% |
| 2cmzA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.55 | 34.0 | 3.01e-01 | 89.1% | 40.9% |
| 2qa4I01 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.52 | 39.0 | 4.10e-01 | 87.5% | 98.2% |
| 6qdws00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.51 | 39.0 | 3.39e-01 | 87.5% | 78.9% |
| 3ocmB00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.50 | 37.0 | 2.93e-01 | 81.2% | 37.7% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3973165 | 818.1.1.0 ↗ | a+b two layers › DNA topoisomerase I domain › DNA topoisomerase I domain › DNA topoisomerase I domain | 0.64 | 52.0 | 4.86e-01 | 89.1% | 71.2% |
| 3502554 | 221.2.1.1 ↗ | a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N | 0.60 | 47.0 | 4.68e-01 | 82.8% | 100.0% |
| 3275203 | 221.2.1.1 ↗ | a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N | 0.57 | 51.0 | 4.63e-01 | 98.4% | 76.5% |
| 3687833 | 5073.1.1.18 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Hydrolase | 0.56 | 45.0 | 2.65e-01 | 92.2% | 86.0% |
| 4927178 | 223.1.1.6 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 | 0.54 | 39.0 | 2.62e-01 | 76.6% | 45.0% |
| 5077402 | 2007.15.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase | 0.52 | 34.0 | 2.51e-01 | 100.0% | 23.2% |
| 3684771 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.51 | 39.0 | 3.17e-01 | 89.1% | 85.5% |
| 3960610 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 40.0 | 2.88e-01 | 96.9% | 27.0% |
D2
medium
residues 81-117
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h87B00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.74 | 56.0 | 3.82e-01 | 86.5% | 28.3% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.73 | 61.0 | 4.20e-01 | 100.0% | 29.9% |
| 3i3gA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.69 | 50.0 | 3.37e-01 | 78.4% | 24.5% |
| 3h3aA04 | 1.10.246.80 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.66 | 51.0 | 4.80e-01 | 94.6% | 70.0% |
| 7fsfA02 | 3.30.56.80 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.65 | 48.0 | 4.04e-01 | 83.8% | 59.4% |
| 5jcpB01 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.63 | 52.0 | 3.35e-01 | 100.0% | 20.0% |
| 4myzC00 | 6.10.250.3430 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 43.0 | 3.85e-01 | 73.0% | 62.7% |
| 2xubA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 49.0 | 3.77e-01 | 97.3% | 38.0% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.61 | 47.0 | 3.86e-01 | 100.0% | 74.7% |
| 1icrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.61 | 50.0 | 3.13e-01 | 97.3% | 17.6% |
| 3r2qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 45.0 | 3.30e-01 | 89.2% | 31.9% |
| 1q0rA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 50.0 | 2.98e-01 | 100.0% | 72.1% |
| 3rpzA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.58 | 41.0 | 2.61e-01 | 97.3% | 12.6% |
| 2etnB01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.57 | 42.0 | 3.40e-01 | 100.0% | 39.5% |
| 4dooA01 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.57 | 44.0 | 3.11e-01 | 100.0% | 25.5% |
| 16vpA00 | 1.10.1290.10 | Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) | 0.57 | 44.0 | 2.68e-01 | 100.0% | 29.6% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 41.0 | 3.56e-01 | 91.9% | 52.1% |
| 4qiwK00 | 3.90.940.10 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega | 0.56 | 41.0 | 3.84e-01 | 94.6% | 89.3% |
| 2qvaA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.54 | 45.0 | 4.10e-01 | 100.0% | 79.2% |
| 7z0sF01 | 3.30.70.3270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 42.0 | 2.90e-01 | 100.0% | 57.8% |
| 7ovuA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 46.0 | 2.89e-01 | 100.0% | 19.2% |
| 1rm6B02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.52 | 37.0 | 3.02e-01 | 100.0% | 43.0% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 42.0 | 3.52e-01 | 100.0% | 51.4% |
| 2kwhA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 39.0 | 3.57e-01 | 100.0% | 62.5% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5071383 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.74 | 63.0 | 3.96e-01 | 100.0% | 20.6% |
| 4148492 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.71 | 57.0 | 4.63e-01 | 100.0% | 46.3% |
| 4852268 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.68 | 55.0 | 4.25e-01 | 100.0% | 50.0% |
| 3964989 | 589.1.1.2 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › SurA_N_3 | 0.68 | 58.0 | 3.89e-01 | 100.0% | 32.0% |
| 3683372 | 2003.1.5.176 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › BMT5-like | 0.65 | 47.0 | 2.88e-01 | 100.0% | 11.8% |
| 5082244 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.64 | 52.0 | 3.44e-01 | 100.0% | 44.4% |
| 3935488 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.64 | 50.0 | 2.91e-01 | 100.0% | 8.9% |
| 3376780 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.64 | 48.0 | 3.61e-01 | 94.6% | 35.3% |
| 4028355 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.63 | 55.0 | 3.46e-01 | 100.0% | 70.0% |
| 3325253 | 109.3.1.31 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF4220 | 0.63 | 50.0 | 3.14e-01 | 100.0% | 18.0% |
| 1546122 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.63 | 47.0 | 4.58e-01 | 100.0% | 79.2% |
| 3990885 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.62 | 47.0 | 3.73e-01 | 100.0% | 37.8% |
| 3957615 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.62 | 46.0 | 3.63e-01 | 100.0% | 72.4% |
| 3173183 | 101.1.2.134 ↗ | alpha arrays › HTH › HTH › winged helix domain › Stn1_C | 0.61 | 47.0 | 3.80e-01 | 100.0% | 71.1% |
| 3975557 | 3782.1.1.0 ↗ | a+b duplicates or obligate multimers › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related | 0.60 | 48.0 | 4.20e-01 | 100.0% | 83.1% |
| 3488233 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.60 | 50.0 | 3.20e-01 | 100.0% | 18.5% |
| 4547733 | 109.4.1.3155 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_12, RapH_N | 0.59 | 49.0 | 2.88e-01 | 100.0% | 11.2% |
| 3765048 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.58 | 48.0 | 2.85e-01 | 94.6% | 26.0% |
| 3501333 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.58 | 45.0 | 3.39e-01 | 100.0% | 39.1% |
| 4935068 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.58 | 46.0 | 3.61e-01 | 86.5% | 45.3% |
| 3798489 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.56 | 42.0 | 3.26e-01 | 100.0% | 35.5% |
| 3590474 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 44.0 | 3.58e-01 | 100.0% | 97.6% |
| 3488990 | 109.4.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID | 0.55 | 41.0 | 2.82e-01 | 97.3% | 20.6% |
| 5040088 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.51 | 42.0 | 3.90e-01 | 100.0% | 72.0% |