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IMGVR_UViG_3300000198_000038-3300000198-LP_F_10_S103_200DRAFT_10020746

Arc-Vir

IMGVR_UViG_3300000198_000038-3300000198-LP_F_10_S103_200DRAFT_10020746

Identity

Kingdom:
archaea

Quality

73.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 70-132
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eyqA02 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.71 61.0 4.52e-01 95.2% 80.5%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 49.0 5.12e-01 100.0% 82.1%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 54.0 5.47e-01 100.0% 88.9%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 43.0 4.29e-01 81.0% 63.1%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.67 59.0 5.60e-01 100.0% 84.2%
2ettA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.67 52.0 4.17e-01 85.7% 68.8%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.66 55.0 5.14e-01 95.2% 90.1%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 48.0 4.99e-01 100.0% 86.4%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.63 44.0 3.59e-01 100.0% 38.7%
1o5yA00 3.10.690.10 Alpha Beta › Roll › Bifunctional nuclease domain › Bifunctional nuclease domain 0.62 46.0 3.50e-01 84.1% 34.3%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 45.0 4.72e-01 93.7% 85.7%
2k3dA00 3.10.450.130 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › folded 79 residue fragment of lin0334 like domains 0.61 51.0 4.65e-01 95.2% 85.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.59e-01 100.0% 83.9%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.59 48.0 3.80e-01 92.1% 70.5%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 52.0 4.90e-01 100.0% 88.2%
2l73A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 46.0 3.65e-01 88.9% 69.2%
2rsoA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 41.0 3.70e-01 88.9% 51.1%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.59 50.0 3.99e-01 100.0% 71.3%
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 49.0 4.11e-01 95.2% 90.1%
2qw7C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.58 47.0 4.16e-01 92.1% 85.3%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.61e-01 100.0% 80.6%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.58 47.0 4.60e-01 93.7% 83.1%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 46.0 3.94e-01 88.9% 81.7%
1ffvB02 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.57 41.0 3.22e-01 77.8% 61.4%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 45.0 3.66e-01 88.9% 90.8%
1szlA01 2.20.100.10 Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat 0.56 38.0 4.11e-01 71.4% 96.2%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.56 45.0 4.15e-01 92.1% 88.4%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.55 40.0 4.11e-01 84.1% 91.1%
4wyqB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 47.0 4.49e-01 98.4% 82.7%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.54 43.0 3.68e-01 90.5% 86.1%
2py5A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 40.0 2.94e-01 95.2% 27.7%
2hzgB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 40.0 3.23e-01 82.5% 69.9%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.53 46.0 4.30e-01 100.0% 86.1%
4egvA02 2.40.50.840 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 43.0 4.12e-01 90.5% 93.3%
5cflA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.53 45.0 3.51e-01 98.4% 78.2%
2kpnA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.63e-01 77.8% 70.1%
3sszA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 40.0 3.23e-01 84.1% 78.2%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.36e-01 95.2% 92.4%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 41.0 4.05e-01 88.9% 82.1%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 40.0 4.08e-01 92.1% 93.7%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3241557 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 52.0 5.53e-01 74.6% 98.2%
4028659 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 66.0 6.08e-01 100.0% 77.5%
3169532 5.1.4.100 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.72 58.0 3.36e-01 87.3% 22.5%
4135259 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 55.0 5.46e-01 100.0% 81.5%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 54.0 5.44e-01 100.0% 83.1%
3709896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 60.0 5.48e-01 100.0% 77.6%
5079843 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 54.0 5.35e-01 100.0% 86.2%
3396324 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.66 52.0 5.20e-01 85.7% 87.7%
3510700 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.65 50.0 4.29e-01 82.5% 63.0%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.64 52.0 4.96e-01 100.0% 77.3%
4026785 4.1.1.279 ↗ beta barrels › SH3 › SH3 › SH3 › IQ 0.63 56.0 4.69e-01 100.0% 63.6%
1933904 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 38.0 4.51e-01 74.6% 100.0%
3365937 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.63 48.0 4.94e-01 88.9% 86.7%
3647116 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.63 48.0 3.90e-01 84.1% 56.8%
3185323 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.61 47.0 3.93e-01 100.0% 48.2%
3496098 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.61 53.0 4.03e-01 100.0% 88.4%
3204055 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.61 51.0 5.05e-01 93.7% 89.2%
4161981 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.61 49.0 3.14e-01 88.9% 20.7%
4151153 211.1.1.28 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › FAM124 0.60 40.0 4.04e-01 81.0% 66.2%
3781935 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 46.0 3.83e-01 88.9% 85.6%
3691144 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 52.0 5.07e-01 100.0% 90.0%
3584555 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 50.0 4.87e-01 100.0% 85.7%
3248847 316.1.1.13 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT 0.60 43.0 3.08e-01 76.2% 63.3%
3723834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 51.0 5.01e-01 100.0% 90.0%
4929323 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 50.0 4.29e-01 100.0% 78.2%
3912620 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.59 50.0 4.69e-01 98.4% 93.8%
5047563 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 46.0 4.40e-01 88.9% 97.3%
3996872 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 44.0 4.46e-01 93.7% 85.2%
3831854 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.58 45.0 4.33e-01 87.3% 80.0%
3183677 523.1.1.3 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 0.58 39.0 3.32e-01 77.8% 40.9%
3519308 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.69e-01 98.4% 95.0%
3811281 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 45.0 4.13e-01 88.9% 77.6%
3264469 4.1.1.309 ↗ beta barrels › SH3 › SH3 › SH3 › MRP-S34 0.56 48.0 4.41e-01 100.0% 75.3%
3248985 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 49.0 3.85e-01 96.8% 86.9%
3542914 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 45.0 3.68e-01 88.9% 71.7%
3378386 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.56 49.0 3.16e-01 98.4% 71.8%
3581093 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.56 48.0 4.49e-01 100.0% 87.5%
3368743 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 41.0 4.18e-01 92.1% 90.0%
4004698 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.54 43.0 4.15e-01 88.9% 100.0%
3518515 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.53 45.0 2.66e-01 100.0% 21.9%
2137686 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.53 45.0 3.64e-01 100.0% 91.8%
2502534 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.53 42.0 3.83e-01 90.5% 71.3%
3411042 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 43.0 4.42e-01 95.2% 98.3%
3322837 1.1.8.15 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D2 0.52 39.0 4.05e-01 100.0% 88.3%
3197575 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.52 42.0 3.78e-01 92.1% 75.6%
5800 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.51 34.0 3.73e-01 85.7% 90.0%
4140206 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 40.0 3.70e-01 90.5% 71.8%
3251857 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.50 40.0 3.21e-01 92.1% 53.3%
D2 high residues 294-351
PDB
Domain cluster: rep: OM687511.1__UNI71467.1__X__00035__D3-72
D3 high residues 359-424
PDB
Domain cluster: rep: IMGVR_UViG_3300024243_000337-3300024243-Ga0233436_10046501__D152-217
D4 medium residues 190-287
PDB
Domain cluster: rep: OK499979.1__UGO49462.1__MCSTEAMY_46__00046__D2-98
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ggmX02 3.40.140.80 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › LpxI C-terminal catalytic domain 0.63 39.0 3.38e-01 74.5% 40.7%
3x29A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.60 44.0 3.71e-01 100.0% 45.2%
1wjnA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 29.0 3.01e-01 72.4% 47.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3229566 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.74 38.0 4.20e-01 73.5% 60.2%
3932469 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 35.0 3.79e-01 74.5% 58.8%
4025950 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.65 51.0 3.97e-01 100.0% 39.5%
3452499 3397.1.1.1 ↗ a+b complex topology › Tic22 › Tic22 › Tic22 › Tic22 0.61 45.0 4.52e-01 75.5% 82.8%
4974744 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.60 48.0 4.03e-01 100.0% 49.7%
3213903 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 36.0 3.68e-01 72.4% 62.1%
4993652 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.58 47.0 3.91e-01 100.0% 49.1%
4004118 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.58 47.0 3.90e-01 100.0% 47.6%
4986830 3016.1.1.3 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_5 0.56 40.0 3.56e-01 75.5% 91.3%
3626593 633.23.1.5 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.55 49.0 3.82e-01 100.0% 88.6%
3486458 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 47.0 3.70e-01 100.0% 88.2%
4646072 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.53 43.0 3.67e-01 96.9% 51.8%
3388407 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.53 47.0 3.36e-01 100.0% 51.0%
4992835 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.53 46.0 3.06e-01 100.0% 26.4%
3492496 633.23.1.4 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.52 47.0 3.58e-01 100.0% 92.6%
5016022 223.1.1.157 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_3 0.52 44.0 4.00e-01 95.9% 95.7%
3489607 633.23.1.4 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.52 46.0 3.61e-01 100.0% 93.0%
4383895 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 37.0 2.69e-01 79.6% 78.7%