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IMGVR_UViG_3300000200_000044-3300000200-SI48aug10_150mDRAFT_10009206

Arc-Vir

IMGVR_UViG_3300000200_000044-3300000200-SI48aug10_150mDRAFT_10009206

Quality

67.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-77
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.85 58.0 5.66e-01 71.4% 80.6%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.79 61.0 5.44e-01 82.1% 69.7%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 57.0 5.58e-01 78.6% 83.9%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.75 61.0 4.98e-01 89.3% 78.4%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.75 53.0 5.12e-01 75.0% 88.9%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 55.0 5.02e-01 80.4% 84.0%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.74 50.0 4.96e-01 71.4% 79.7%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 51.0 4.70e-01 75.0% 69.4%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 57.0 5.63e-01 89.3% 96.6%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 49.0 5.30e-01 73.2% 91.5%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.67 47.0 5.13e-01 96.4% 91.3%
3uueA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.65 49.0 3.12e-01 80.4% 87.1%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 46.0 3.29e-01 76.8% 42.9%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 48.0 2.92e-01 85.7% 39.3%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 49.0 4.95e-01 98.2% 83.9%
7x4pA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.62 44.0 3.27e-01 76.8% 85.4%
2jjdF02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 44.0 2.85e-01 75.0% 31.7%
3ghjA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 44.0 3.58e-01 78.6% 40.5%
2k4rA00 2.40.20.10 Mainly Beta › Beta Barrel › Plasminogen Kringle 4 › Plasminogen Kringle 4 0.61 44.0 4.06e-01 80.4% 94.8%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 52.0 4.63e-01 96.4% 66.7%
4mtsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 42.0 3.31e-01 76.8% 35.7%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 47.0 3.54e-01 91.1% 94.8%
1ijqA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 45.0 3.05e-01 92.9% 72.0%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.58 45.0 3.48e-01 87.5% 48.5%
2oap101 3.30.450.380 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 43.0 2.92e-01 80.4% 66.4%
1uurA02 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.57 42.0 3.32e-01 82.1% 71.9%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.57 45.0 3.57e-01 89.3% 80.5%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 46.0 4.21e-01 92.9% 69.9%
2ichA02 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.56 42.0 3.26e-01 83.9% 49.2%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 38.0 3.77e-01 75.0% 86.7%
4jcwA02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.54 41.0 3.59e-01 83.9% 84.4%
3oxhA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 44.0 3.42e-01 96.4% 94.2%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 37.0 2.86e-01 75.0% 82.8%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 43.0 4.16e-01 96.4% 78.8%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 44.0 4.04e-01 100.0% 71.6%
1xf1A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.31e-01 82.1% 84.2%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 42.0 4.02e-01 100.0% 76.1%
1ej6B00 3.90.1830.10 Alpha Beta › Alpha-Beta Complex › Inner capsid protein lambda-1 › Inner capsid protein lambda-1 0.52 39.0 2.17e-01 85.7% 46.8%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 40.0 2.83e-01 89.3% 99.5%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.18e-01 92.9% 67.9%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 4.10e-01 100.0% 87.9%
3oxhA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 43.0 3.47e-01 96.4% 89.5%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 42.0 4.00e-01 98.2% 77.6%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.51 41.0 3.20e-01 94.6% 75.0%
6z46V01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 39.0 2.81e-01 85.7% 63.7%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 41.0 3.96e-01 98.2% 78.8%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 3.23e-01 100.0% 70.5%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 41.0 3.96e-01 98.2% 78.8%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 41.0 3.99e-01 96.4% 81.2%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3511007 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.82 61.0 4.67e-01 78.6% 50.0%
3917372 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.79 59.0 5.29e-01 78.6% 68.0%
4186983 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.77 58.0 5.24e-01 80.4% 72.0%
4427477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 57.0 4.79e-01 80.4% 60.0%
4170983 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 56.0 5.14e-01 80.4% 82.7%
4629735 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 52.0 4.93e-01 71.4% 75.4%
4300449 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.75 52.0 4.97e-01 73.2% 76.9%
4423306 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.74 53.0 4.86e-01 76.8% 68.0%
3616769 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.73 54.0 4.47e-01 78.6% 58.9%
3556601 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.72 55.0 5.27e-01 82.1% 92.3%
4339993 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.72 51.0 4.43e-01 76.8% 57.8%
3708448 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 61.0 5.76e-01 98.2% 87.1%
3609095 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 60.0 5.81e-01 98.2% 92.3%
3600338 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 59.0 5.30e-01 98.2% 90.0%
5056572 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.69 51.0 3.21e-01 80.4% 17.9%
4029617 5.1.11.39 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › DUF7899 0.68 53.0 3.17e-01 87.5% 17.2%
5029245 375.1.1.9 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.67 52.0 4.58e-01 87.5% 95.3%
4973274 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.65 51.0 5.24e-01 98.2% 85.5%
4149372 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 51.0 4.83e-01 94.6% 72.3%
4602962 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.65 54.0 3.86e-01 89.3% 74.7%
3373434 2003.1.2.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.64 47.0 2.80e-01 76.8% 29.1%
4275696 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.64 46.0 3.60e-01 78.6% 46.9%
3962341 2003.1.3.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.64 46.0 3.22e-01 76.8% 66.3%
3298962 2003.1.3.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_3 0.64 46.0 3.13e-01 76.8% 55.6%
3415836 209.1.1.0 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.64 44.0 3.61e-01 71.4% 59.0%
4003728 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 47.0 3.01e-01 80.4% 43.3%
4598956 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 54.0 4.27e-01 91.1% 87.6%
4969515 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.63 49.0 2.96e-01 87.5% 34.6%
5082700 2003.1.3.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.62 48.0 2.94e-01 87.5% 37.2%
3736330 2003.1.2.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.62 44.0 2.56e-01 76.8% 22.7%
3659428 3556.1.1.1 a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.61 45.0 3.87e-01 82.1% 77.3%
5050497 2003.1.3.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.61 47.0 2.65e-01 87.5% 17.5%
4023863 309.1.1.16 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16, Peptidase_M16_C, M16C_assoc, PreP_C 0.61 46.0 2.47e-01 80.4% 22.6%
4953759 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 45.0 4.48e-01 83.9% 100.0%
3396910 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.60 46.0 3.26e-01 83.9% 93.9%
4931657 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.59 53.0 4.62e-01 96.4% 70.0%
3983195 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.59 40.0 4.39e-01 71.4% 91.1%
3709493 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 49.0 3.65e-01 89.3% 67.7%
5035086 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.58 52.0 5.13e-01 96.4% 91.7%
4160115 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.58 54.0 4.05e-01 100.0% 69.6%
4461475 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 52.0 4.77e-01 96.4% 81.4%
4928706 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.58 52.0 4.78e-01 96.4% 82.9%
2642946 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.58 52.0 4.32e-01 96.4% 65.9%
4504508 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.58 53.0 4.58e-01 100.0% 78.8%
4028381 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.58 53.0 4.21e-01 100.0% 66.7%
4341478 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.58 53.0 4.52e-01 100.0% 78.8%
4940372 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.57 51.0 4.70e-01 96.4% 85.7%
4945674 2.1.1.252 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2_C 0.57 51.0 4.69e-01 96.4% 87.1%
3517120 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 45.0 3.20e-01 91.1% 93.2%
3707788 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 43.0 2.99e-01 91.1% 62.6%
659 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.56 46.0 4.21e-01 92.9% 69.9%
3248970 101.1.12.0 alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.54 41.0 3.41e-01 85.7% 90.9%
3949336 220.1.1.216 beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N 0.53 36.0 2.98e-01 71.4% 50.9%
3702975 3556.1.1.0 a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 0.53 43.0 3.81e-01 98.2% 69.1%
2641776 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.52 46.0 3.54e-01 100.0% 66.4%
3764537 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.52 43.0 3.89e-01 98.2% 66.3%
4995743 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.52 42.0 3.44e-01 98.2% 92.5%
5049906 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 33.0 3.27e-01 87.5% 60.0%