←Back to structures
IMGVR_UViG_3300000200_000047-3300000200-SI48aug10_150mDRAFT_10006471
Arc-VirIMGVR_UViG_3300000200_000047-3300000200-SI48aug10_150mDRAFT_10006471
Identity
- Kingdom:
- archaea
Quality
88.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-63
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5nl6B01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 58.0 | 4.41e-01 | 100.0% | 71.1% |
| 4mndA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.67 | 57.0 | 3.87e-01 | 100.0% | 61.8% |
| 2eklA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 45.0 | 2.98e-01 | 72.9% | 100.0% |
| 7b00A01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.64 | 57.0 | 3.29e-01 | 100.0% | 48.3% |
| 5t3dA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.62 | 51.0 | 3.46e-01 | 91.7% | 97.1% |
| 2kwhA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 48.0 | 4.66e-01 | 93.8% | 92.9% |
| 1jlcB04 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.58 | 40.0 | 3.62e-01 | 70.8% | 53.1% |
| 1vdhA01 | 3.30.70.1030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 | 0.57 | 45.0 | 3.43e-01 | 89.6% | 57.0% |
| 3jvoA00 | 1.10.3230.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › Phage gp6-like head-tail connector protein | 0.56 | 41.0 | 3.43e-01 | 100.0% | 41.7% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4378189 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.82 | 66.0 | 4.32e-01 | 91.7% | 22.7% |
| 3606062 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 59.0 | 4.26e-01 | 79.2% | 35.4% |
| 3353595 | 109.4.1.1637 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U3_assoc_6, UTP6_C | 0.76 | 68.0 | 3.77e-01 | 100.0% | 10.6% |
| 4454880 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.75 | 61.0 | 5.33e-01 | 100.0% | 60.0% |
| 3764064 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.74 | 56.0 | 4.69e-01 | 83.3% | 61.2% |
| 3614319 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.74 | 55.0 | 4.88e-01 | 81.2% | 61.4% |
| 3575022 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.74 | 50.0 | 3.93e-01 | 70.8% | 36.0% |
| 3645589 | 3748.1.1.3 ↗ | extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › eIF3h_C | 0.73 | 65.0 | 4.80e-01 | 100.0% | 39.8% |
| 4110889 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.73 | 53.0 | 4.08e-01 | 77.1% | 37.1% |
| 3975557 | 3782.1.1.0 ↗ | a+b duplicates or obligate multimers › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related | 0.70 | 61.0 | 5.47e-01 | 93.8% | 69.2% |
| 5002913 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.69 | 51.0 | 3.55e-01 | 81.2% | 25.9% |
| 3702975 | 3556.1.1.0 ↗ | a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 | 0.69 | 58.0 | 4.74e-01 | 97.9% | 100.0% |
| 3742852 | 101.1.2.147 ↗ | alpha arrays › HTH › HTH › winged helix domain › ORC4_C | 0.69 | 58.0 | 4.24e-01 | 95.8% | 53.1% |
| 3627844 | 3331.1.1.8 ↗ | a+b two layers › Uncharacterized protein yibL › Uncharacterized protein yibL › Uncharacterized protein yibL › RRP36 | 0.69 | 51.0 | 3.78e-01 | 81.2% | 33.1% |
| 3599369 | 9.15.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 | 0.67 | 59.0 | 3.77e-01 | 100.0% | 57.9% |
| 3580409 | 3826.1.1.26 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › RRP36 | 0.66 | 49.0 | 3.63e-01 | 81.2% | 31.9% |
| 3696222 | 109.4.1.1379 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30880 | 0.65 | 58.0 | 3.33e-01 | 100.0% | 28.6% |
| 3244244 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.65 | 49.0 | 4.25e-01 | 85.4% | 58.7% |
| 3902174 | 320.4.1.1 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › TIMELESS_C | 0.65 | 54.0 | 4.23e-01 | 93.8% | 43.8% |
| 4014379 | 149.1.1.0 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 | 0.64 | 52.0 | 2.99e-01 | 93.8% | 12.0% |
| 3327949 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.63 | 54.0 | 3.41e-01 | 100.0% | 72.0% |
| 3665032 | 2003.1.2.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 | 0.54 | 47.0 | 3.02e-01 | 100.0% | 82.6% |
| 5040221 | 206.1.2.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt | 0.52 | 41.0 | 2.67e-01 | 100.0% | 16.7% |