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IMGVR_UViG_3300000214_000071-3300000214-SI54feb11_200mDRAFT_10025671
Arc-VirIMGVR_UViG_3300000214_000071-3300000214-SI54feb11_200mDRAFT_10025671
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-131
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00008__D53-163_249-265
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h7tA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.76 | 58.0 | 5.92e-01 | 98.3% | 82.0% |
| 1eq9A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.72 | 55.0 | 5.76e-01 | 98.3% | 87.6% |
| 1shyA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.71 | 54.0 | 5.69e-01 | 98.3% | 88.2% |
| 1a7sA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.69 | 52.0 | 5.49e-01 | 98.3% | 85.7% |
| 4g6iC02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.66 | 42.0 | 4.64e-01 | 95.7% | 79.8% |
| 1i8dA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.65 | 44.0 | 4.87e-01 | 94.8% | 88.8% |
| 3a35A02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.64 | 43.0 | 4.73e-01 | 95.7% | 85.9% |
| 2f5kA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 27.0 | 3.87e-01 | 92.2% | 92.0% |
| 2olgA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 55.0 | 5.29e-01 | 98.3% | 89.9% |
| 2xwxA03 | 2.60.40.2550 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 34.0 | 3.67e-01 | 75.7% | 65.3% |
| 5c71A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 34.0 | 3.73e-01 | 77.4% | 66.7% |
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.57 | 49.0 | 4.45e-01 | 96.5% | 83.3% |
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.56 | 48.0 | 4.41e-01 | 94.8% | 96.6% |
| 1y12B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.56 | 48.0 | 4.41e-01 | 96.5% | 82.7% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.56 | 42.0 | 4.55e-01 | 92.2% | 92.9% |
| 2efiA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 26.0 | 2.83e-01 | 95.7% | 50.0% |
| 2k4qA00 | 4.10.410.40 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › | 0.54 | 43.0 | 3.98e-01 | 88.7% | 87.8% |
| 4uy8X00 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.53 | 25.0 | 2.98e-01 | 70.4% | 63.6% |
| 4c47A01 | 2.60.40.1620 | Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like | 0.51 | 41.0 | 4.07e-01 | 96.5% | 82.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4057590 | 1.1.5.86 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 | 0.59 | 54.0 | 5.07e-01 | 100.0% | 83.6% |
| 4400928 | 1.1.7.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase | 0.59 | 42.0 | 4.15e-01 | 93.9% | 68.8% |
| 3969384 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.56 | 49.0 | 4.41e-01 | 96.5% | 86.9% |
| 3977123 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.56 | 48.0 | 4.39e-01 | 96.5% | 84.4% |
| 1124583 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.56 | 48.0 | 4.41e-01 | 94.8% | 96.6% |
| 4929752 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.56 | 47.0 | 4.34e-01 | 95.7% | 85.2% |
| 4514734 | 1.1.13.42 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Tail_tube | 0.54 | 46.0 | 4.74e-01 | 93.9% | 100.0% |
| 4056773 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.52 | 30.0 | 3.35e-01 | 80.0% | 74.1% |
| 3536856 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.52 | 44.0 | 4.06e-01 | 95.7% | 98.1% |
| 3883937 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.51 | 37.0 | 4.04e-01 | 88.7% | 92.6% |
| 3326194 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 41.0 | 4.17e-01 | 89.6% | 100.0% |
D2
medium
residues 1-16_132-169
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5hmaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.79 | 48.0 | 3.80e-01 | 70.4% | 31.7% |
| 1ylnA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.70 | 49.0 | 3.88e-01 | 75.9% | 62.3% |
| 3dorA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.57 | 42.0 | 3.42e-01 | 81.5% | 62.6% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.55 | 37.0 | 2.93e-01 | 70.4% | 65.5% |
| 2x3eA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.55 | 42.0 | 3.12e-01 | 87.0% | 67.5% |
| 4fxdA05 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.54 | 38.0 | 3.07e-01 | 77.8% | 88.0% |
| 5xc5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 37.0 | 2.73e-01 | 75.9% | 36.5% |
| 5ekaA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.52 | 41.0 | 3.64e-01 | 90.7% | 57.6% |
| 4czwA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 42.0 | 2.60e-01 | 100.0% | 65.3% |
| 1jkmA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 37.0 | 2.38e-01 | 87.0% | 76.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3672714 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 48.0 | 4.70e-01 | 70.4% | 61.7% |
| 3443107 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.65 | 54.0 | 3.62e-01 | 96.3% | 60.4% |
| 3322460 | 4.1.1.94 ↗ | beta barrels › SH3 › SH3 › SH3 › SAWADEE | 0.63 | 46.0 | 3.74e-01 | 94.4% | 38.3% |
| 94 | 1.1.7.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M18 | 0.56 | 37.0 | 3.58e-01 | 70.4% | 66.2% |
| 3582935 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.56 | 46.0 | 3.44e-01 | 94.4% | 91.0% |
| 3274993 | 10.12.1.52 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 | 0.53 | 44.0 | 2.69e-01 | 98.1% | 27.0% |
| 4505103 | 7581.1.1.0 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like | 0.51 | 35.0 | 2.62e-01 | 74.1% | 25.3% |
| 4459698 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.51 | 34.0 | 3.09e-01 | 70.4% | 90.7% |