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IMGVR_UViG_3300000214_000079-3300000214-SI54feb11_200mDRAFT_100210011
Arc-VirIMGVR_UViG_3300000214_000079-3300000214-SI54feb11_200mDRAFT_100210011
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-31_49-196
Domain cluster:
rep: IMGVR_UViG_3300022888_000061-3300022888-Ga0233428_100233232__D23-126_165-193
D2
medium
residues 197-276
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.64 | 37.0 | 3.33e-01 | 85.0% | 41.3% |
| 2ds2D01 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.62 | 36.0 | 4.02e-01 | 81.2% | 77.2% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.62 | 38.0 | 4.01e-01 | 76.2% | 69.4% |
| 4ex8A00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.59 | 47.0 | 3.20e-01 | 87.5% | 96.7% |
| 2gk6A03 | 6.10.140.1240 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 37.0 | 4.30e-01 | 85.0% | 100.0% |
| 3q2eA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.56 | 41.0 | 3.80e-01 | 78.8% | 59.8% |
| 2iboA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 40.0 | 3.86e-01 | 83.7% | 67.4% |
| 3jr7A01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.55 | 41.0 | 3.57e-01 | 78.8% | 87.3% |
| 3zdbA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.53 | 35.0 | 3.38e-01 | 98.8% | 59.6% |
| 1h3lB00 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.53 | 35.0 | 3.53e-01 | 85.0% | 67.9% |
| 5grqA00 | 1.10.8.810 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain | 0.52 | 41.0 | 4.02e-01 | 85.0% | 92.2% |
| 1u5kA02 | 1.20.1440.120 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain | 0.50 | 37.0 | 3.29e-01 | 80.0% | 78.4% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3473298 | 3277.2.1.1 ↗ | alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C | 0.63 | 43.0 | 3.80e-01 | 91.3% | 48.7% |
| 3659912 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 42.0 | 3.16e-01 | 72.5% | 68.3% |
| 3288173 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.60 | 46.0 | 3.61e-01 | 85.0% | 67.6% |
| 3514703 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.59 | 43.0 | 4.33e-01 | 77.5% | 88.7% |
| 3896767 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.56 | 40.0 | 4.10e-01 | 73.8% | 82.7% |
| 3238747 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.56 | 45.0 | 3.45e-01 | 87.5% | 40.0% |
| 3487928 | 3277.2.1.0 ↗ | alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 | 0.56 | 42.0 | 3.76e-01 | 90.0% | 56.5% |
| 4322565 | 632.15.1.4 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › HSP70 | 0.56 | 39.0 | 3.83e-01 | 73.8% | 68.2% |