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IMGVR_UViG_3300000215_000175-3300000215-SI53jan11_120mDRAFT_10043761
Arc-VirIMGVR_UViG_3300000215_000175-3300000215-SI53jan11_120mDRAFT_10043761
Identity
- Kingdom:
- archaea
Quality
93.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-85
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02773.22 best | S-AdoMet_synt_C | 44.4 | 2.30e-11 | 100.0% | 68.1% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4le5B03 | 3.30.300.10 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.91 | 85.0 | 7.12e-01 | 100.0% | 74.1% |
| 6rk7E03 | 3.30.300.10 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.87 | 81.0 | 6.79e-01 | 100.0% | 70.6% |
| 1vhhA00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.61 | 41.0 | 3.42e-01 | 70.6% | 72.0% |
| 2q7eA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 40.0 | 3.11e-01 | 77.6% | 99.5% |
| 3a2bA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.53 | 37.0 | 2.74e-01 | 72.9% | 83.8% |
| 2lu1A00 | 3.30.70.2370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 37.0 | 3.69e-01 | 76.5% | 73.0% |
| 2c81A01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.52 | 37.0 | 2.69e-01 | 75.3% | 41.5% |
| 1tltA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 40.0 | 3.26e-01 | 91.8% | 91.9% |
| 6ci7A01 | 3.30.160.660 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 36.0 | 3.23e-01 | 75.3% | 90.2% |
| 1bccA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.50 | 40.0 | 3.14e-01 | 90.6% | 42.2% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4258272 | 327.17.1.4 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_C | 0.91 | 86.0 | 6.43e-01 | 100.0% | 61.6% |
| 3201528 | 327.17.1.4 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_C | 0.91 | 86.0 | 6.85e-01 | 100.0% | 60.6% |
| 3597650 | 327.17.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase | 0.91 | 85.0 | 7.03e-01 | 100.0% | 71.4% |
| 3957434 | 327.17.1.8 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_M, S-AdoMet_synt_C | 0.90 | 85.0 | 5.61e-01 | 100.0% | 32.0% |
| 3662621 | 327.17.1.7 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_N, S-AdoMet_synt_M, S-AdoMet_synt_C | 0.90 | 85.0 | 5.31e-01 | 100.0% | 25.5% |
| 4945721 | 327.17.1.4 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_C | 0.90 | 85.0 | 6.83e-01 | 100.0% | 64.0% |
| 4331233 | 327.17.1.4 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_C | 0.90 | 84.0 | 6.41e-01 | 100.0% | 53.3% |
| 4448090 | 327.17.1.7 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_N, S-AdoMet_synt_M, S-AdoMet_synt_C | 0.89 | 84.0 | 5.22e-01 | 100.0% | 25.4% |
| 4928329 | 327.17.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_N | 0.89 | 62.0 | 4.18e-01 | 71.8% | 25.3% |
| 3730160 | 327.17.1.4 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_C | 0.87 | 61.0 | 5.73e-01 | 71.8% | 69.0% |
| 4957988 | 327.17.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › AdoMet_Synthase | 0.72 | 57.0 | 5.22e-01 | 84.7% | 67.3% |
| 4927943 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.67 | 45.0 | 4.91e-01 | 72.9% | 84.3% |
| 3592742 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.65 | 47.0 | 4.68e-01 | 77.6% | 86.7% |
| 6916 | 223.3.1.6 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S13 | 0.63 | 23.0 | 3.42e-01 | 81.2% | 73.0% |
| 5045307 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.59 | 42.0 | 3.40e-01 | 76.5% | 82.9% |
| 3240114 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.54 | 45.0 | 2.82e-01 | 90.6% | 86.0% |
| 3511668 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.54 | 44.0 | 2.83e-01 | 90.6% | 76.1% |
| 3915989 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.53 | 43.0 | 2.51e-01 | 89.4% | 90.7% |
| 4183861 | 7573.1.1.4 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase | 0.53 | 45.0 | 3.22e-01 | 100.0% | 57.9% |
| 4034416 | 2004.1.1.481 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_29 | 0.52 | 42.0 | 2.77e-01 | 89.4% | 82.1% |
| 3965698 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.52 | 42.0 | 2.54e-01 | 89.4% | 88.9% |
| 5054541 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.51 | 41.0 | 2.55e-01 | 90.6% | 87.1% |