Back to structures

IMGVR_UViG_3300000255_000121-3300000255-LP_F_10_SI03_135DRAFT_10026331

Arc-Vir

IMGVR_UViG_3300000255_000121-3300000255-LP_F_10_SI03_135DRAFT_10026331

Quality

75.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-108
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dodA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.79 68.0 6.06e-01 100.0% 67.1%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.76 63.0 5.02e-01 96.4% 70.6%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.74 65.0 5.74e-01 98.2% 70.4%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 58.0 5.81e-01 83.9% 89.3%
4h9nC00 1.20.58.2170 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 59.0 4.11e-01 100.0% 31.7%
5cofA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.70 49.0 3.47e-01 73.2% 64.0%
2m7bA00 1.10.10.1920 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.70 57.0 5.25e-01 94.6% 90.9%
4h8aB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.70 47.0 4.58e-01 71.4% 65.0%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 58.0 5.12e-01 98.2% 87.4%
2k85A00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.68 58.0 5.61e-01 100.0% 93.8%
3q23A08 1.20.140.110 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.66 52.0 3.85e-01 87.5% 85.7%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 42.0 3.34e-01 100.0% 34.3%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 4.80e-01 98.2% 74.7%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.98e-01 92.9% 94.0%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.64 45.0 3.56e-01 75.0% 37.9%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.64 50.0 4.38e-01 89.3% 72.2%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.64 44.0 3.91e-01 71.4% 50.6%
4fcyB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 54.0 5.21e-01 100.0% 86.2%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 42.0 3.73e-01 71.4% 46.9%
4is7A02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.62 50.0 4.64e-01 100.0% 69.4%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.62 43.0 4.13e-01 71.4% 67.7%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.61 42.0 3.97e-01 82.1% 60.3%
2avuB00 1.10.4000.10 Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD 0.61 40.0 3.25e-01 71.4% 36.5%
3rh3A01 1.20.120.930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 0.60 49.0 3.67e-01 87.5% 70.7%
2el7A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.60 43.0 3.67e-01 76.8% 83.0%
3u5ei01 1.10.10.1760 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36 0.60 48.0 4.66e-01 96.4% 82.1%
1g4wR02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 48.0 3.34e-01 94.6% 57.0%
1y88A02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.60 46.0 4.57e-01 100.0% 84.7%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 53.0 4.55e-01 100.0% 77.0%
7m2wE01 1.20.120.1900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain 0.58 48.0 3.07e-01 100.0% 72.3%
1r3dA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 46.0 3.07e-01 92.9% 60.3%
1v9mA02 1.20.1690.10 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain 0.58 49.0 4.06e-01 96.4% 66.3%
1te2A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 48.0 4.45e-01 96.4% 84.7%
2i99A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.57 50.0 3.66e-01 98.2% 77.3%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 45.0 3.81e-01 85.7% 75.0%
1rrmA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.57 46.0 3.30e-01 100.0% 92.5%
2d2sA01 1.20.58.1210 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain 0.56 50.0 3.91e-01 98.2% 49.1%
4p56A00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.56 48.0 3.02e-01 98.2% 77.1%
2guzA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.55 48.0 4.50e-01 100.0% 93.0%
4gpkB01 1.25.40.1000 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 50.0 4.07e-01 100.0% 71.7%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 45.0 4.30e-01 100.0% 80.6%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.53 43.0 3.34e-01 92.9% 93.2%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.53 42.0 3.79e-01 85.7% 81.6%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.52 43.0 4.15e-01 89.3% 81.2%
2gomA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.51 41.0 4.02e-01 94.6% 80.3%
5pg1A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.51 44.0 3.53e-01 100.0% 78.3%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3240699 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.84 69.0 6.45e-01 91.1% 72.9%
5064744 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.83 71.0 4.96e-01 94.6% 34.7%
3716486 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 72.0 6.48e-01 96.4% 78.7%
3672635 101.1.1.295 alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 0.81 74.0 6.64e-01 100.0% 74.7%
4437630 3705.1.1.0 alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) 0.81 73.0 6.75e-01 100.0% 87.1%
3313889 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 66.0 6.91e-01 92.9% 100.0%
5048198 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.80 72.0 6.50e-01 100.0% 84.0%
3234027 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.80 63.0 6.21e-01 91.1% 81.7%
4932388 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.80 71.0 6.47e-01 100.0% 78.7%
5078179 173.1.1.0 alpha arrays › Uteroglobin-like › Uteroglobin-like › Uteroglobin-like 0.79 70.0 6.34e-01 98.2% 80.0%
3714293 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.78 67.0 6.39e-01 96.4% 95.4%
3708809 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 65.0 6.25e-01 94.6% 93.8%
3924079 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.76 67.0 5.85e-01 100.0% 70.6%
3220510 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.76 59.0 6.15e-01 91.1% 98.0%
4678981 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 57.0 5.92e-01 83.9% 92.0%
3391605 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 66.0 6.31e-01 98.2% 96.9%
4180031 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.75 54.0 5.67e-01 76.8% 94.0%
3258173 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 58.0 5.92e-01 89.3% 96.4%
4126690 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.74 55.0 5.63e-01 80.4% 87.3%
1068638 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.74 58.0 5.81e-01 83.9% 89.3%
4145773 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.74 55.0 5.59e-01 80.4% 87.3%
4337422 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.73 61.0 4.38e-01 94.6% 35.4%
3233004 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 58.0 6.05e-01 92.9% 100.0%
3991312 101.1.17.16 alpha arrays › HTH › HTH › FF domain › FF_RHG35_4th 0.73 60.0 6.13e-01 94.6% 96.4%
3510637 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 62.0 5.08e-01 100.0% 58.2%
4993593 198.1.1.27 alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF27234 0.72 62.0 5.55e-01 100.0% 76.2%
4638215 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.72 53.0 5.55e-01 80.4% 96.0%
3390249 4003.1.1.0 alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins 0.71 60.0 5.48e-01 98.2% 72.0%
4599915 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.70 59.0 5.70e-01 96.4% 86.2%
3952621 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.70 61.0 5.77e-01 100.0% 87.0%
3711217 101.7.1.0 alpha arrays › HTH › DEK-C › DEK-C 0.70 58.0 5.60e-01 96.4% 93.8%
3234099 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.70 60.0 5.78e-01 98.2% 84.6%
4073017 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.70 50.0 5.10e-01 78.6% 87.3%
3584520 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 58.0 4.78e-01 98.2% 69.1%
3686422 621.1.1.0 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.68 60.0 4.89e-01 100.0% 60.0%
4927487 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.67 57.0 5.29e-01 100.0% 74.7%
4972925 632.19.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.66 43.0 3.62e-01 82.1% 41.1%
4990523 129.1.1.15 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer 0.66 44.0 3.74e-01 73.2% 41.1%
3758241 198.1.1.1 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.65 53.0 4.72e-01 98.2% 61.1%
4297679 101.1.1.45 alpha arrays › HTH › HTH › Three-helical HTH › BrxA 0.65 56.0 5.40e-01 100.0% 87.7%
4312088 3226.1.1.5 alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › BenE 0.64 47.0 2.80e-01 76.8% 15.6%
3241469 130.1.1.1 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.64 48.0 4.85e-01 82.1% 100.0%
3696809 101.1.2.251 alpha arrays › HTH › HTH › winged helix domain › DUF6581 0.63 55.0 4.84e-01 100.0% 67.1%
4179237 6028.1.1.0 alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor 0.62 52.0 5.01e-01 100.0% 93.8%
3789371 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.62 45.0 4.22e-01 78.6% 100.0%
5049800 2484.1.1.75 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L5e 0.62 42.0 2.90e-01 71.4% 32.3%
3789554 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.62 53.0 4.63e-01 100.0% 88.9%
4030141 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.61 46.0 3.69e-01 82.1% 67.3%
4018150 2005.3.1.1 a/b three-layered sandwiches › HUP domain-like › Pyoverdine biosynthesis protein PvcA › Pyoverdine biosynthesis protein PvcA › DIT1_PvcA 0.60 49.0 2.98e-01 92.9% 40.5%
3201716 622.1.1.7 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › DUF7607 0.58 51.0 4.12e-01 100.0% 87.3%
3186154 622.1.1.7 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › DUF7607 0.58 50.0 4.06e-01 100.0% 87.3%
5012328 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 48.0 3.37e-01 100.0% 86.2%
3892460 548.1.1.1 alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP 0.55 40.0 3.95e-01 92.9% 73.3%
3270160 603.1.1.3 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE 0.55 48.0 3.95e-01 96.4% 73.0%
3708254 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.55 43.0 4.31e-01 100.0% 96.7%
3247877 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.54 43.0 3.75e-01 92.9% 56.7%
3736340 622.1.1.7 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › DUF7607 0.53 43.0 3.53e-01 96.4% 73.9%
3583564 130.1.1.1 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.53 42.0 4.02e-01 94.6% 85.7%