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IMGVR_UViG_3300000255_000176-3300000255-LP_F_10_SI03_135DRAFT_10046711
Arc-VirIMGVR_UViG_3300000255_000176-3300000255-LP_F_10_SI03_135DRAFT_10046711
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-75
Domain cluster:
rep: MW015081.1__QPX48081.1__X__00116__D1-68
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01327.27 best | Pep_deformylase | 33.6 | 4.00e-08 | 96.8% | 33.3% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rl4B00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.93 | 78.0 | 5.60e-01 | 100.0% | 35.3% |
| 1lmeA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.91 | 83.0 | 6.00e-01 | 100.0% | 39.0% |
| 5mteA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.88 | 79.0 | 5.92e-01 | 100.0% | 43.1% |
| 3g5kA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.87 | 82.0 | 5.64e-01 | 100.0% | 44.8% |
| 3u04A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.87 | 82.0 | 5.75e-01 | 100.0% | 40.1% |
| 3e3uA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.87 | 82.0 | 5.53e-01 | 100.0% | 36.7% |
| 1zxzB00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.86 | 81.0 | 5.53e-01 | 100.0% | 42.9% |
| 1szzA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.85 | 79.0 | 5.58e-01 | 100.0% | 42.7% |
| 3qu1A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.84 | 78.0 | 5.55e-01 | 100.0% | 37.5% |
| 1lm4A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.81 | 74.0 | 5.11e-01 | 100.0% | 41.6% |
| 3k2tA01 | 3.30.505.50 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain | 0.75 | 51.0 | 5.87e-01 | 74.2% | 95.7% |
| 5hsqA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 45.0 | 3.62e-01 | 87.1% | 62.0% |
| 2a90A02 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.56 | 42.0 | 4.25e-01 | 82.3% | 82.0% |
| 3h1tA01 | 3.90.1570.30 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.54 | 46.0 | 3.68e-01 | 100.0% | 79.6% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.52 | 38.0 | 2.98e-01 | 77.4% | 79.0% |
| 4g1iA02 | 3.30.300.170 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.52 | 37.0 | 3.54e-01 | 74.2% | 67.6% |
| 3cebA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.51 | 38.0 | 3.41e-01 | 96.8% | 57.6% |
| 2a6pA00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.51 | 43.0 | 3.15e-01 | 100.0% | 54.4% |
| 3bb9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 36.0 | 2.90e-01 | 74.2% | 81.6% |
| 1v7pB00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.51 | 42.0 | 3.44e-01 | 98.4% | 70.1% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3987299 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.92 | 83.0 | 6.19e-01 | 100.0% | 43.7% |
| 4030761 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.90 | 84.0 | 5.96e-01 | 100.0% | 38.1% |
| 4133607 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.90 | 83.0 | 5.95e-01 | 100.0% | 38.1% |
| 4256308 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.89 | 84.0 | 5.96e-01 | 100.0% | 39.4% |
| 4039287 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.89 | 84.0 | 5.86e-01 | 100.0% | 37.1% |
| 4325293 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.89 | 83.0 | 5.72e-01 | 100.0% | 41.1% |
| 2121396 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.89 | 79.0 | 5.94e-01 | 100.0% | 43.1% |
| 2579249 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.89 | 84.0 | 5.97e-01 | 100.0% | 45.9% |
| 4275485 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.88 | 83.0 | 5.84e-01 | 100.0% | 36.5% |
| 4420329 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.88 | 83.0 | 5.67e-01 | 100.0% | 38.4% |
| 3596563 | 289.1.1.0 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase | 0.88 | 80.0 | 5.34e-01 | 100.0% | 28.6% |
| 3966296 | 289.1.1.0 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase | 0.87 | 82.0 | 5.81e-01 | 100.0% | 38.2% |
| 3401134 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 81.0 | 5.59e-01 | 100.0% | 43.4% |
| 3276058 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 81.0 | 5.74e-01 | 100.0% | 42.9% |
| 4470382 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 82.0 | 5.67e-01 | 100.0% | 41.1% |
| 4224338 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 81.0 | 5.57e-01 | 100.0% | 40.5% |
| 3693404 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 82.0 | 5.59e-01 | 100.0% | 35.8% |
| 3336542 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 81.0 | 6.45e-01 | 100.0% | 71.3% |
| 140542 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 82.0 | 5.67e-01 | 100.0% | 41.3% |
| 4096233 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 82.0 | 5.70e-01 | 100.0% | 39.1% |
| 170021 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 82.0 | 5.53e-01 | 100.0% | 36.7% |
| 3309735 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 81.0 | 6.20e-01 | 100.0% | 50.4% |
| 1877349 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 82.0 | 5.75e-01 | 100.0% | 40.8% |
| 4165265 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 81.0 | 5.44e-01 | 100.0% | 37.7% |
| 3440362 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 81.0 | 5.53e-01 | 100.0% | 43.2% |
| 3427612 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.87 | 81.0 | 5.58e-01 | 100.0% | 35.1% |
| 981342 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.86 | 81.0 | 5.58e-01 | 100.0% | 35.7% |
| 168447 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.86 | 80.0 | 5.55e-01 | 100.0% | 35.3% |
| 4443928 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.86 | 81.0 | 5.52e-01 | 100.0% | 33.2% |
| 4628922 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.86 | 80.0 | 5.55e-01 | 100.0% | 41.3% |
| 4539518 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.86 | 80.0 | 5.47e-01 | 100.0% | 41.6% |
| 3710708 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.84 | 77.0 | 5.24e-01 | 100.0% | 33.2% |
| 4999343 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.84 | 78.0 | 5.55e-01 | 100.0% | 39.4% |
| 167197 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.82 | 75.0 | 5.13e-01 | 100.0% | 42.4% |
| 4220705 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.81 | 73.0 | 5.17e-01 | 100.0% | 40.0% |
| 4336204 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.80 | 73.0 | 5.12e-01 | 100.0% | 41.6% |
| 4304576 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.77 | 70.0 | 4.88e-01 | 100.0% | 39.5% |
| 4588602 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.74 | 52.0 | 5.77e-01 | 96.8% | 92.0% |
| 3289024 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.67 | 52.0 | 4.43e-01 | 100.0% | 53.7% |
| 3961969 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.65 | 49.0 | 5.05e-01 | 98.4% | 83.3% |
| 4997027 | 2011.2.1.6 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › tRNA_deacylase | 0.63 | 43.0 | 3.12e-01 | 72.6% | 92.4% |
| 4994059 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.59 | 45.0 | 3.57e-01 | 83.9% | 88.9% |
| 4984818 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.59 | 54.0 | 3.70e-01 | 100.0% | 83.5% |
| 4838661 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 45.0 | 3.80e-01 | 85.5% | 54.1% |
| 3901483 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 42.0 | 4.16e-01 | 79.0% | 93.8% |
| 3851347 | 101.1.2.235 ↗ | alpha arrays › HTH › HTH › winged helix domain › Nlrc4-like_WHD | 0.55 | 40.0 | 3.93e-01 | 79.0% | 92.9% |
| 3531322 | 101.1.2.564 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27514 | 0.55 | 38.0 | 3.81e-01 | 74.2% | 100.0% |
| 4048866 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.55 | 47.0 | 3.61e-01 | 100.0% | 46.7% |
| 3919983 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.54 | 47.0 | 3.08e-01 | 100.0% | 74.5% |
| 3960379 | 286.1.1.0 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like | 0.54 | 46.0 | 4.11e-01 | 96.8% | 68.9% |
| 3785506 | 3279.1.1.0 ↗ | alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases | 0.54 | 36.0 | 3.44e-01 | 71.0% | 85.0% |