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IMGVR_UViG_3300000256_000326-3300000256-LP_F_10_SI03_120DRAFT_10036747
Arc-VirIMGVR_UViG_3300000256_000326-3300000256-LP_F_10_SI03_120DRAFT_10036747
Identity
- Kingdom:
- archaea
Quality
97.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-82
Domain cluster:
rep: IMGVR_UViG_3300031650_000024-3300031650-Ga0315539_10037823__D229-316
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25692.2 best | Phage_depo_C | 25.3 | 2.30e-05 | 88.9% | 75.6% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.81 | 64.0 | 6.18e-01 | 95.1% | 75.3% |
| 4dnyA00 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.80 | 62.0 | 5.53e-01 | 98.8% | 60.6% |
| 1qexA02 | 2.60.120.640 | Mainly Beta › Sandwich › Jelly Rolls › gp9 | 0.76 | 67.0 | 6.19e-01 | 96.3% | 79.6% |
| 1mgpA02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.70 | 37.0 | 3.19e-01 | 74.1% | 33.9% |
| 3kd4A03 | 2.60.120.1130 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 46.0 | 3.88e-01 | 77.8% | 99.3% |
| 4f7kA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.61 | 49.0 | 4.09e-01 | 85.2% | 69.6% |
| 4pibA00 | 2.60.40.3910 | Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein | 0.59 | 46.0 | 3.70e-01 | 87.7% | 97.1% |
| 1y9wA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 34.0 | 3.12e-01 | 77.8% | 47.1% |
| 1dv2A02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 40.0 | 2.77e-01 | 74.1% | 30.1% |
| 1wsrA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.54 | 37.0 | 3.60e-01 | 88.9% | 63.7% |
| 4mamB03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 38.0 | 2.97e-01 | 75.3% | 44.1% |
| 4lzkA00 | 2.60.40.3910 | Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein | 0.53 | 43.0 | 3.55e-01 | 91.4% | 96.9% |
| 2wnkA01 | 2.60.40.1320 | Mainly Beta › Sandwich › Immunoglobulin-like › SRS domain | 0.53 | 39.0 | 3.56e-01 | 80.2% | 96.6% |
| 2v5yA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 36.0 | 3.41e-01 | 70.4% | 82.4% |
| 1sxjH02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.52 | 37.0 | 3.28e-01 | 77.8% | 90.6% |
| 4hj1A01 | 2.60.98.50 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › | 0.52 | 41.0 | 3.29e-01 | 87.7% | 66.3% |
| 6igbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 41.0 | 2.72e-01 | 88.9% | 41.9% |
| 4q66A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 36.0 | 3.51e-01 | 82.7% | 65.2% |
| 3zyyX03 | 3.10.20.880 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 36.0 | 3.60e-01 | 75.3% | 88.5% |
| 2wnkA02 | 2.60.40.1320 | Mainly Beta › Sandwich › Immunoglobulin-like › SRS domain | 0.51 | 39.0 | 3.66e-01 | 86.4% | 73.6% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2581340 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.81 | 61.0 | 5.99e-01 | 91.4% | 73.6% |
| 184462 | 520.1.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › T4_gp9_10 | 0.76 | 67.0 | 5.23e-01 | 96.3% | 48.8% |
| 3217205 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.67 | 49.0 | 4.43e-01 | 77.8% | 97.3% |
| 3892939 | 10.32.1.229 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27640 | 0.65 | 51.0 | 4.27e-01 | 85.2% | 95.7% |
| 4943895 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 43.0 | 3.21e-01 | 74.1% | 52.3% |
| 4932473 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.56 | 39.0 | 2.84e-01 | 74.1% | 50.2% |
| 3232088 | 10.4.1.20 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › DUF7592 | 0.55 | 43.0 | 3.94e-01 | 88.9% | 83.5% |
| 3575745 | 5.1.4.90 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Itfg2 | 0.54 | 46.0 | 3.13e-01 | 100.0% | 36.4% |
| 3613891 | 5.1.4.341 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_2nd | 0.52 | 41.0 | 2.66e-01 | 87.7% | 20.3% |