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IMGVR_UViG_3300000256_001048-3300000256-LP_F_10_SI03_120DRAFT_10029526

Arc-Vir

IMGVR_UViG_3300000256_001048-3300000256-LP_F_10_SI03_120DRAFT_10029526

Quality

79.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-37_253-379
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j7dA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.61 42.0 4.56e-01 70.7% 95.7%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.53 27.0 3.69e-01 75.0% 97.6%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 35.0 3.97e-01 89.6% 95.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3741445 241.4.1.0 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.66 34.0 4.25e-01 75.0% 80.0%
3993469 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.62 41.0 4.90e-01 72.0% 100.0%
3593650 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.58 39.0 4.37e-01 92.1% 87.7%
3519601 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.57 41.0 4.60e-01 74.4% 99.2%
3440094 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.55 21.0 3.24e-01 76.2% 90.0%
3833012 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.52 25.0 3.23e-01 77.4% 81.2%
D2 medium residues 38-82_162-252
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2acvA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 36.0 3.27e-01 98.5% 48.7%
D3 medium residues 83-161
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 39.0 4.82e-01 77.2% 95.6%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 41.0 4.95e-01 79.7% 95.9%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 39.0 4.43e-01 96.2% 79.3%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.64 43.0 4.57e-01 89.9% 77.5%
3h3hB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 44.0 3.84e-01 84.8% 46.7%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 42.0 3.79e-01 82.3% 48.2%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 34.0 4.13e-01 81.0% 82.0%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 44.0 3.99e-01 82.3% 53.2%
6ro0D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 47.0 4.21e-01 81.0% 87.3%
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 42.0 3.57e-01 82.3% 42.4%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 42.0 3.63e-01 83.5% 44.5%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 44.0 3.82e-01 82.3% 48.8%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 44.0 3.92e-01 81.0% 54.5%
7pjjA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 47.0 3.95e-01 83.5% 83.1%
2e3vA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 44.0 4.00e-01 77.2% 89.3%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 43.0 3.44e-01 75.9% 74.2%
3bpnC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 42.0 3.90e-01 74.7% 92.1%
3k6oA02 2.60.40.2370 Mainly Beta › Sandwich › Immunoglobulin-like › NigD-like, C-terminal beta sandwich domain 0.59 44.0 3.71e-01 79.7% 78.3%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 36.0 3.61e-01 83.5% 58.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 33.0 3.38e-01 75.9% 55.3%
2shpB03 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 44.0 3.06e-01 82.3% 47.8%
5evhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 39.0 3.45e-01 82.3% 46.3%
1sjwA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 44.0 3.59e-01 82.3% 49.3%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 42.0 3.91e-01 79.7% 64.7%
2f2hA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.56 44.0 3.21e-01 89.9% 55.5%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.60e-01 83.5% 53.5%
1vwxk00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 35.0 3.68e-01 81.0% 72.5%
7bvaA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.55 49.0 3.54e-01 100.0% 87.2%
1xweA01 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 45.0 3.72e-01 89.9% 73.4%
4l5rC02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 41.0 4.00e-01 81.0% 100.0%
4h3uA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 42.0 3.59e-01 83.5% 66.9%
1nh2D02 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.54 32.0 4.01e-01 73.4% 100.0%
2knrA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.54 37.0 3.34e-01 72.2% 50.0%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.54 37.0 2.82e-01 72.2% 95.1%
5ds1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.74e-01 77.2% 76.1%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 33.0 3.48e-01 72.2% 67.6%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.53 32.0 3.48e-01 74.7% 71.2%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 38.0 4.05e-01 83.5% 86.8%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.88e-01 77.2% 100.0%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.52 37.0 3.07e-01 75.9% 64.3%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 33.0 3.71e-01 70.9% 89.3%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.52 42.0 3.05e-01 91.1% 69.0%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.19e-01 79.7% 91.4%
4lgqA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.37e-01 83.5% 70.7%
4binA01 2.60.40.3500 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.50e-01 83.5% 88.8%
2e1bA02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.51 44.0 3.79e-01 97.5% 64.3%
3g8yA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 38.0 2.40e-01 78.5% 38.4%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.51 37.0 2.56e-01 79.7% 88.3%
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 40.0 2.94e-01 87.3% 72.5%
5fmgG00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 40.0 3.03e-01 91.1% 74.0%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4992039 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.70 38.0 3.98e-01 84.8% 56.8%
4461636 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.68 42.0 4.44e-01 82.3% 71.0%
4165306 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.66 46.0 4.16e-01 86.1% 53.3%
3613043 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.64 47.0 3.31e-01 75.9% 29.4%
4961931 2.4.1.7 beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK 0.61 46.0 3.82e-01 97.5% 45.0%
3522676 11.1.1.1017 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30513 0.59 43.0 4.11e-01 75.9% 96.7%
3486144 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.59 44.0 2.95e-01 79.7% 52.1%
4488657 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 46.0 3.90e-01 87.3% 51.5%
5051694 218.4.1.1 a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.58 50.0 4.50e-01 96.2% 73.6%
3236112 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.58 39.0 3.35e-01 70.9% 45.9%
3172146 2.1.1.93 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Cdc13_OB4_dimer 0.57 49.0 4.06e-01 97.5% 75.3%
3604365 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 49.0 4.48e-01 94.9% 100.0%
2644388 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 45.0 3.79e-01 83.5% 61.5%
3426699 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 48.0 4.25e-01 94.9% 97.5%
4032029 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 37.0 3.56e-01 86.1% 55.8%
3880605 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 40.0 3.89e-01 77.2% 76.7%
4960887 814.1.1.0 a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase 0.55 44.0 3.98e-01 93.7% 61.7%
3867207 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.55 37.0 3.51e-01 82.3% 57.9%
3720155 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 41.0 3.93e-01 87.3% 67.4%
3169934 3409.1.1.1 a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › APG6 0.55 38.0 2.84e-01 72.2% 47.0%
4965843 2.4.1.19 beta barrels › OB-fold › MOP-like › MOP-like › DUF7861 0.54 43.0 4.07e-01 86.1% 83.0%
3599542 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 40.0 3.71e-01 82.3% 82.7%
2599967 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 39.0 3.74e-01 77.2% 93.6%
3497733 2003.1.2.17 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase 0.54 42.0 2.88e-01 84.8% 44.1%
4930246 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 39.0 3.23e-01 77.2% 43.4%
3938106 9.15.1.0 beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 0.53 37.0 3.12e-01 73.4% 90.3%
4439550 2.3.1.2 beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.53 44.0 3.68e-01 91.1% 64.3%
5025264 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 40.0 3.71e-01 79.7% 66.7%
3904562 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.53 36.0 3.66e-01 70.9% 81.2%
3413648 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 40.0 3.31e-01 81.0% 55.9%
2605239 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.52 38.0 3.38e-01 83.5% 50.8%
4943168 1.1.7.144 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AAA_11 0.51 45.0 4.29e-01 98.7% 96.8%
3594413 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.51 35.0 3.51e-01 93.7% 70.0%
4992704 2003.1.2.40 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_oxidored 0.51 43.0 2.79e-01 92.4% 76.3%
3979453 7579.1.1.61 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PhoPQ_related 0.51 39.0 2.52e-01 82.3% 44.3%
3830803 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 43.0 4.00e-01 96.2% 76.2%
3690825 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.51 41.0 2.65e-01 91.1% 85.2%
3885295 2.3.1.2 beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.51 41.0 3.51e-01 91.1% 53.7%
3987928 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.50 38.0 3.65e-01 82.3% 75.8%