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IMGVR_UViG_3300000341_000023-3300000341-OneHSP_6670CDRAFT_10012261
Arc-VirIMGVR_UViG_3300000341_000023-3300000341-OneHSP_6670CDRAFT_10012261
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-98
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01402.28 best | RHH_1 | 25.3 | 1.50e-05 | 42.7% | 90.2% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2efvA00 | 3.30.70.3260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF10802, DUF2540 | 0.79 | 61.0 | 6.56e-01 | 96.9% | 95.1% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.72 | 58.0 | 5.88e-01 | 100.0% | 86.5% |
| 2rh3A00 | 1.10.1220.190 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › VirC2, RHH domain | 0.69 | 62.0 | 5.73e-01 | 99.0% | 95.9% |
| 2kxeA00 | 1.10.8.800 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › D-family DNA polymerase, DP1 subunit N-terminal domain | 0.62 | 36.0 | 3.99e-01 | 100.0% | 73.6% |
| 2x1dA02 | 1.10.10.2120 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.61 | 42.0 | 4.71e-01 | 93.8% | 93.2% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 32.0 | 4.00e-01 | 93.8% | 86.2% |
| 2fe3B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 31.0 | 3.28e-01 | 88.5% | 58.8% |
| 1f5oA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 41.0 | 3.65e-01 | 83.3% | 84.6% |
| 2vd3A03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 34.0 | 3.80e-01 | 90.6% | 82.4% |
| 1vigA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 37.0 | 4.10e-01 | 95.8% | 95.8% |
| 6o0aA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 41.0 | 3.62e-01 | 85.4% | 73.8% |
| 2o5rA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.52 | 28.0 | 3.47e-01 | 96.9% | 97.9% |
| 1werA01 | 1.10.506.10 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 | 0.52 | 36.0 | 3.06e-01 | 72.9% | 92.0% |
| 5ja2A01 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.51 | 45.0 | 3.30e-01 | 96.9% | 75.9% |
| 4dnjA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 39.0 | 2.61e-01 | 82.3% | 63.4% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.51 | 36.0 | 4.00e-01 | 96.9% | 97.3% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4983836 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.82 | 76.0 | 7.14e-01 | 100.0% | 92.9% |
| 2871 | 101.1.11.17 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF2540 | 0.79 | 61.0 | 6.56e-01 | 96.9% | 95.1% |
| 5016958 | 101.1.11.17 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF2540 | 0.77 | 60.0 | 6.45e-01 | 97.9% | 98.8% |
| 5016567 | 101.1.11.17 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF2540 | 0.77 | 60.0 | 6.44e-01 | 97.9% | 98.8% |
| 4373529 | 101.1.11.43 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › TraY | 0.76 | 69.0 | 6.90e-01 | 100.0% | 99.0% |
| 3243442 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.72 | 65.0 | 6.03e-01 | 100.0% | 79.8% |
| 4326331 | 101.1.11.112 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › SGT1 | 0.70 | 63.0 | 5.74e-01 | 100.0% | 93.8% |
| 2869 | 101.1.11.8 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › VirC2 | 0.69 | 62.0 | 5.73e-01 | 99.0% | 95.9% |
| 3443593 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.56 | 45.0 | 4.65e-01 | 96.9% | 92.2% |
| 3970124 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.56 | 50.0 | 3.68e-01 | 96.9% | 80.4% |
| 3291101 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.56 | 50.0 | 3.64e-01 | 96.9% | 80.0% |
| 4945647 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.56 | 37.0 | 3.67e-01 | 99.0% | 65.0% |
| 4975762 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.55 | 34.0 | 3.13e-01 | 100.0% | 47.2% |
| 4608472 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.54 | 47.0 | 3.52e-01 | 95.8% | 79.2% |
| 3508423 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.52 | 38.0 | 3.98e-01 | 100.0% | 84.4% |
| 4324364 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.52 | 45.0 | 3.37e-01 | 95.8% | 79.2% |