IMGVR_UViG_3300000346_000097-3300000346-BeoS_FeMat_6568CDRAFT_10044184

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300000346_000097-3300000346-BeoS_FeMat_6568CDRAFT_10044184 ↗
Kingdom:: archaea

90.6 mean pLDDT

Singleton — not in a non-trivial cluster

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-92

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06053.18 best	DUF929	93.6	1.80e-26	100.0%	41.9%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2iylD01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.68	41.0	4.77e-01	83.7%	86.2%
2kt0A01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.60	32.0	4.08e-01	75.0%	97.9%
1kczA01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.59	38.0	3.17e-01	82.6%	37.4%
3ie7A00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.58	43.0	2.98e-01	78.3%	86.4%
1o4xA02	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.53	31.0	3.71e-01	77.2%	96.3%
2yx8A00	1.10.150.510	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family	0.52	40.0	4.28e-01	83.7%	93.8%
1ra6A03	1.20.960.20	Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A ›	0.52	34.0	3.52e-01	79.3%	71.3%
1ui6A00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.51	41.0	3.32e-01	90.2%	75.0%
1j09A05	1.10.10.350	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.51	39.0	3.90e-01	89.1%	79.6%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3263057	102.1.1.38 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RlmN_N	0.64	35.0	4.04e-01	83.7%	73.8%
4140969	102.1.1.38 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RlmN_N	0.62	37.0	4.17e-01	80.4%	77.1%
4044415	102.1.1.38 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RlmN_N	0.61	33.0	3.97e-01	82.6%	80.0%
4943201	181.1.1.32 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54	0.60	50.0	5.25e-01	98.9%	98.8%
3481559	108.1.1.29 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7	0.59	34.0	4.05e-01	81.5%	86.7%
4518433	181.1.1.1 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N	0.58	50.0	5.06e-01	100.0%	95.6%
3651470	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.55	39.0	3.48e-01	83.7%	52.3%
3265617	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.55	45.0	4.45e-01	100.0%	83.8%
3594470	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.52	40.0	4.09e-01	94.6%	84.4%
4074226	2005.1.1.29 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g	0.51	45.0	3.18e-01	100.0%	95.2%

D2 medium residues 93-153

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06053.18 best	DUF929	44.1	2.60e-11	82.0%	25.9%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ojoB02	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.56	39.0	2.88e-01	82.0%	24.3%
1q16B03	1.10.3650.10	Mainly Alpha › Orthogonal Bundle › nitrate reductase domain fold › nitrate reductase domain like	0.54	43.0	4.00e-01	86.9%	93.5%
4i14A02	3.40.50.10990	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II	0.52	38.0	3.01e-01	77.0%	54.0%
4pk9A00	3.40.1090.10	Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain	0.52	41.0	2.58e-01	86.9%	17.3%