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IMGVR_UViG_3300000361_000271-3300000361-SL_6KL_011_BRINEDRAFT_10054592

Arc-Vir

IMGVR_UViG_3300000361_000271-3300000361-SL_6KL_011_BRINEDRAFT_10054592

Identity

Kingdom:
archaea

Quality

87.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-108
PDB
Domain cluster: rep: ON135435.1__UPI15601.1__PhiBP823_50__00050__D56-144
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.63 27.0 3.35e-01 94.2% 63.1%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 48.0 4.10e-01 100.0% 93.2%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 48.0 4.12e-01 100.0% 88.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940785 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.81 76.0 7.30e-01 100.0% 89.6%
4680318 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.81 61.0 6.54e-01 100.0% 91.1%
3195751 241.11.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › Luciferase 0.61 45.0 3.81e-01 76.9% 71.4%
3691998 386.1.1.18 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz 0.59 28.0 3.37e-01 74.0% 67.7%
3691420 376.1.4.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › PF26200 0.56 33.0 3.86e-01 82.7% 87.1%
4373650 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 40.0 4.08e-01 75.0% 100.0%
3965583 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.53 48.0 4.35e-01 100.0% 92.9%
4609469 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 38.0 3.78e-01 75.0% 98.2%
3220397 376.1.6.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR_1 0.51 31.0 3.61e-01 77.9% 93.8%
D2 high residues 444-512
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.65 35.0 4.32e-01 91.3% 92.3%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.63 54.0 3.96e-01 97.1% 73.8%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 37.0 3.12e-01 91.3% 37.3%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 32.0 3.17e-01 97.1% 46.6%
2wzoA01 3.30.160.360 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 48.0 3.90e-01 92.8% 50.4%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 38.0 3.97e-01 95.7% 75.4%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 32.0 3.25e-01 94.2% 52.8%
3cetB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 44.0 3.82e-01 87.0% 97.3%
1q9uA00 3.30.310.70 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TT1751-like domain 0.56 39.0 3.29e-01 75.4% 75.0%
5je6A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 45.0 3.12e-01 89.9% 84.1%
3edsA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 45.0 3.67e-01 92.8% 53.4%
2g8yA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.54 45.0 3.30e-01 98.6% 79.8%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.38e-01 89.9% 48.2%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 38.0 3.32e-01 92.8% 49.1%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 41.0 3.80e-01 89.9% 95.9%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.53 37.0 3.49e-01 73.9% 67.4%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.53 42.0 3.75e-01 89.9% 67.0%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 40.0 2.75e-01 84.1% 98.6%
3cobC00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.52 43.0 2.90e-01 100.0% 90.9%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 31.0 3.28e-01 89.9% 64.5%
5m1pB00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.52 44.0 3.32e-01 100.0% 73.5%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 39.0 2.53e-01 88.4% 52.0%
4iq0C02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 43.0 3.31e-01 100.0% 68.5%
2fhxA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 43.0 3.02e-01 97.1% 80.8%
4z32A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.32e-01 98.6% 55.2%
1hyuA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.18e-01 94.2% 98.9%
6qj2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 2.73e-01 94.2% 42.7%
4o2wD00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.51 41.0 2.70e-01 95.7% 88.7%
4kcaA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 39.0 2.57e-01 91.3% 45.5%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3975472 1104.1.1.1 ↗ a+b complex topology › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › DUF927 0.68 58.0 4.59e-01 100.0% 50.3%
3629357 221.4.1.18 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDT9_N 0.62 50.0 3.49e-01 92.8% 38.4%
5023580 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 35.0 3.63e-01 89.9% 60.0%
3933293 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 39.0 4.17e-01 95.7% 77.6%
3896280 284.1.3.4 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.60 49.0 4.82e-01 92.8% 90.7%
3209304 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.59 52.0 4.91e-01 98.6% 97.6%
5001380 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 41.0 3.91e-01 71.0% 83.7%
3769980 284.1.3.4 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.59 50.0 4.61e-01 95.7% 78.9%
3573692 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 40.0 3.34e-01 94.2% 41.2%
3576577 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.58 46.0 4.53e-01 91.3% 82.7%
4888987 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.57 33.0 3.32e-01 94.2% 55.1%
4465313 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.57 49.0 3.48e-01 98.6% 89.1%
3426611 7581.1.1.41 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_N, Chal_sti_synt_C, FAE1_CUT1_RppA, ACP_syn_III 0.57 47.0 3.05e-01 97.1% 89.3%
3698762 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.57 33.0 2.89e-01 94.2% 36.9%
5082722 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.56 40.0 2.63e-01 76.8% 65.0%
5068175 2484.1.1.49 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.56 46.0 3.89e-01 98.6% 97.7%
4154258 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.55 42.0 3.15e-01 85.5% 69.2%
4280539 109.21.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.55 45.0 2.64e-01 98.6% 41.0%
4296331 2484.1.1.41 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.54 46.0 2.98e-01 100.0% 78.7%
4962375 2484.1.1.49 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.54 44.0 3.75e-01 100.0% 97.8%
3647627 2484.1.1.21 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.53 45.0 3.64e-01 100.0% 83.3%
4473250 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.53 44.0 3.54e-01 98.6% 80.0%
3428945 7581.1.1.25 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › FAE1_CUT1_RppA, ACP_syn_III_C 0.52 45.0 3.28e-01 100.0% 77.1%
4635031 2484.1.1.299 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_C, AnmK 0.52 47.0 3.54e-01 100.0% 80.6%
4429265 2484.1.1.31 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Glucokinase 0.52 43.0 3.10e-01 95.7% 84.1%
3717380 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.52 34.0 3.30e-01 89.9% 58.7%
5058414 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.51 42.0 2.75e-01 92.8% 46.2%
3606914 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.51 43.0 2.67e-01 95.7% 24.3%
5063668 2484.1.1.21 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.51 41.0 3.26e-01 94.2% 100.0%
3269367 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.27e-01 92.8% 54.7%
4594044 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.51 42.0 3.42e-01 98.6% 90.7%
3387155 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.51 42.0 3.21e-01 100.0% 62.6%
3647625 7581.1.1.39 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C, FAE1_CUT1_RppA 0.51 42.0 3.14e-01 97.1% 80.9%
4161761 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.65e-01 95.7% 80.9%
4562140 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.50 31.0 3.25e-01 95.7% 68.3%
3800778 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 42.0 3.13e-01 97.1% 94.9%
4961432 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.50 39.0 3.55e-01 85.5% 84.2%
D3 high residues 519-616
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 52.0 5.14e-01 100.0% 71.4%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 46.0 4.84e-01 99.0% 77.0%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 46.0 5.12e-01 95.9% 88.3%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 4.89e-01 100.0% 73.6%
7qssA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.65 48.0 3.87e-01 100.0% 40.4%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.75e-01 100.0% 74.8%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 4.35e-01 100.0% 71.8%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 4.57e-01 99.0% 90.2%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 4.45e-01 100.0% 79.6%
3f5bA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 40.0 3.35e-01 100.0% 41.9%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 4.01e-01 100.0% 65.0%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 4.76e-01 100.0% 98.9%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 44.0 4.46e-01 99.0% 92.6%
5hl8C00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.53 37.0 4.00e-01 93.9% 88.6%
5qinA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 39.0 4.19e-01 79.6% 92.9%
3dtnA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 35.0 2.87e-01 93.9% 35.8%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 38.0 4.06e-01 79.6% 89.7%
4c0tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 39.0 4.02e-01 80.6% 89.1%
3mdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 38.0 3.73e-01 79.6% 70.9%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 37.0 3.93e-01 77.6% 100.0%
4o4bB00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.50 43.0 3.17e-01 92.9% 82.8%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018482 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 67.0 6.68e-01 99.0% 99.0%
3944118 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 52.0 5.40e-01 100.0% 81.1%
4928075 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 51.0 5.54e-01 99.0% 88.7%
4926994 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.72 51.0 5.03e-01 100.0% 69.2%
5051882 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.71 50.0 4.82e-01 99.0% 64.5%
3602557 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.71 51.0 5.29e-01 100.0% 81.1%
4946524 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 50.0 4.80e-01 99.0% 64.5%
5042730 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.71 49.0 5.28e-01 99.0% 83.5%
4991130 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 50.0 4.54e-01 99.0% 55.4%
4993554 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 51.0 4.53e-01 100.0% 53.6%
5011597 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.69 49.0 4.95e-01 100.0% 72.7%
5025451 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.69 49.0 4.74e-01 100.0% 65.5%
4978419 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.68 47.0 5.21e-01 99.0% 94.7%
5076142 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 48.0 4.94e-01 100.0% 77.9%
5013282 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 60.0 5.60e-01 100.0% 95.8%
5050784 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 50.0 5.20e-01 99.0% 87.8%
3602589 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.66 47.0 4.70e-01 100.0% 73.0%
4940868 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.66 47.0 4.84e-01 100.0% 77.9%
3741612 101.1.2.90 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.65 46.0 4.79e-01 99.0% 80.0%
3493460 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 50.0 4.99e-01 93.9% 80.0%
3588406 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 42.0 4.90e-01 88.8% 100.0%
3700237 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 55.0 5.00e-01 100.0% 69.2%
3421785 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.64 45.0 4.16e-01 100.0% 56.2%
4993816 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.62 45.0 3.94e-01 100.0% 49.3%
4964272 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 43.0 4.25e-01 100.0% 67.6%
4622104 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 45.0 4.71e-01 100.0% 85.6%
5065934 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 46.0 4.91e-01 98.0% 94.1%
3410283 101.1.2.4 ↗ alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.61 44.0 4.22e-01 95.9% 65.2%
3616787 206.1.2.3 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › IPK 0.60 49.0 3.53e-01 87.8% 82.2%
3505855 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.59 44.0 4.72e-01 88.8% 96.2%
3603759 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.59 45.0 4.46e-01 100.0% 77.1%
3213269 206.1.2.3 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › IPK 0.59 47.0 3.41e-01 87.8% 83.8%
5035395 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.59 43.0 3.66e-01 100.0% 45.3%
4957834 101.1.2.920 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_TbsP_C 0.59 44.0 4.12e-01 100.0% 65.0%
3593220 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 42.0 4.61e-01 94.9% 93.8%
3798234 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.55 40.0 4.04e-01 88.8% 76.0%
3628199 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.55 40.0 4.03e-01 88.8% 76.0%
4404541 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 40.0 2.76e-01 78.6% 54.6%
3442823 70.3.1.13 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET_TTL 0.54 40.0 3.08e-01 80.6% 71.2%
3690420 3685.1.1.1 ↗ a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › FmdA_AmdA 0.53 36.0 3.79e-01 71.4% 100.0%
5052032 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 46.0 4.01e-01 98.0% 64.1%
3276848 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.51 31.0 3.36e-01 79.6% 73.8%
5027605 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.50 37.0 3.87e-01 98.0% 90.6%
D4 medium residues 128-257
PDB
Domain cluster: rep: KX119204.1__ANT43181.1__X__00011__D99-235
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5w36B01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.81 77.0 7.61e-01 100.0% 100.0%
4edgA01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.81 76.0 7.50e-01 99.2% 100.0%
2au3A02 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.80 74.0 7.53e-01 100.0% 100.0%
3wknF00 6.20.50.120 Special › Other non-globular › N-terminal domain of TfIIb › 0.58 24.0 3.55e-01 70.8% 100.0%
1xxmC01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.56 27.0 3.40e-01 73.1% 77.0%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.54 28.0 3.55e-01 90.0% 85.5%
1twfI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 25.0 3.18e-01 75.4% 73.7%
2fkcA01 3.40.1350.40 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 33.0 3.57e-01 100.0% 74.5%
3cqxC00 1.20.58.890 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 28.0 3.50e-01 77.7% 84.0%
3hjhA02 3.30.2060.10 Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain 0.50 31.0 3.61e-01 92.3% 90.7%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5003469 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.84 78.0 7.64e-01 97.7% 99.3%
4096247 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.84 77.0 7.86e-01 97.7% 100.0%
4434598 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.82 77.0 7.73e-01 99.2% 98.5%
3589490 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.82 74.0 7.36e-01 95.4% 100.0%
4186968 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.82 76.0 7.69e-01 99.2% 98.5%
4043621 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.81 75.0 7.26e-01 99.2% 100.0%
4206082 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.80 75.0 7.52e-01 98.5% 100.0%
1407259 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.80 73.0 7.49e-01 96.9% 100.0%
4467859 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.80 72.0 7.42e-01 95.4% 100.0%
4157635 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.79 72.0 7.37e-01 95.4% 100.0%
4588732 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.79 72.0 7.09e-01 95.4% 100.0%
3297022 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.79 46.0 5.95e-01 95.4% 100.0%
4023633 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.62 50.0 5.44e-01 94.6% 99.1%
4613966 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 25.0 3.60e-01 77.7% 96.0%
4403111 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.54 28.0 3.22e-01 95.4% 66.3%
3661686 304.114.1.2 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N 0.51 26.0 2.91e-01 81.5% 59.0%
D5 medium residues 258-385
PDB
Domain cluster: rep: IMGVR_UViG_3300042256_000037-3300042256-Ga0451646_00357_7329_9968__D263-392
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13155.13 best Toprim_2 40.8 3.30e-10 69.5% 98.9%
PF01751.29 Toprim 24.9 2.50e-05 61.7% 72.9%