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IMGVR_UViG_3300000510_000369-3300000510-Foulum_10032103

Arc-Vir

IMGVR_UViG_3300000510_000369-3300000510-Foulum_10032103

Quality

78.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 54-147
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 36.0 4.18e-01 75.5% 85.5%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.60 50.0 4.60e-01 92.6% 81.6%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 4.56e-01 70.2% 100.0%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 46.0 3.95e-01 87.2% 76.0%
2opjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 38.0 3.98e-01 70.2% 96.5%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.55 38.0 4.24e-01 85.1% 89.2%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.55 42.0 3.87e-01 95.7% 63.2%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 42.0 4.04e-01 95.7% 70.3%
7q5yB01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.55 41.0 3.80e-01 100.0% 61.7%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.47e-01 92.6% 51.4%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 44.0 4.12e-01 94.7% 71.6%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 4.08e-01 95.7% 83.1%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.54 47.0 4.22e-01 98.9% 77.9%
1sr9A02 3.30.160.270 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain 0.54 46.0 3.90e-01 96.8% 65.9%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.53 45.0 3.66e-01 93.6% 90.6%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 44.0 3.92e-01 95.7% 62.7%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 43.0 4.15e-01 93.6% 77.4%
1fguB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 3.98e-01 81.9% 84.8%
1wduB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.53 40.0 3.15e-01 84.0% 96.8%
7arcC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.53 40.0 3.59e-01 100.0% 57.0%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 3.72e-01 97.9% 52.3%
2ar5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 44.0 4.16e-01 94.7% 78.6%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 46.0 3.90e-01 98.9% 60.9%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.78e-01 100.0% 72.5%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 44.0 3.73e-01 97.9% 59.8%
2fkcA01 3.40.1350.40 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 36.0 3.46e-01 89.4% 63.6%
4e5xG00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.96e-01 97.9% 80.8%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.51 44.0 4.10e-01 96.8% 92.5%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.51 38.0 3.88e-01 90.4% 79.8%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5011439 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.69 43.0 3.72e-01 100.0% 40.7%
5030959 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.66 39.0 4.22e-01 96.8% 68.8%
4316603 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.66 42.0 4.69e-01 100.0% 81.3%
4973193 802.1.1.1 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.66 41.0 4.31e-01 100.0% 69.4%
3189470 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 45.0 4.98e-01 100.0% 89.3%
5075212 802.1.1.1 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.63 39.0 4.06e-01 100.0% 65.6%
3601320 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.63 45.0 4.43e-01 87.2% 70.0%
4931303 802.1.1.1 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.63 39.0 4.10e-01 100.0% 69.4%
4026643 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 43.0 4.52e-01 76.6% 82.4%
3288884 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 42.0 4.07e-01 71.3% 86.7%
3478366 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.60 46.0 4.43e-01 94.7% 72.4%
3706905 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 36.0 3.79e-01 96.8% 65.9%
3619859 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 44.0 4.04e-01 92.6% 63.3%
3599169 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 43.0 4.14e-01 100.0% 70.5%
3864474 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 43.0 3.58e-01 94.7% 46.1%
3718300 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 34.0 3.73e-01 72.3% 73.3%
4360067 896.1.1.1 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.56 37.0 4.00e-01 100.0% 79.7%
3927894 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.56 45.0 3.99e-01 96.8% 60.0%
3893735 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.56 44.0 4.12e-01 93.6% 68.7%
3911245 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 40.0 3.76e-01 95.7% 62.7%
3699264 883.1.1.9 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_LBD 0.55 46.0 3.69e-01 91.5% 67.9%
402817 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 41.0 3.97e-01 90.4% 69.8%
3709549 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 46.0 3.83e-01 94.7% 52.1%
3324949 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 35.0 3.40e-01 94.7% 58.1%
3262159 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 44.0 3.99e-01 92.6% 63.8%
3554073 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 44.0 4.01e-01 91.5% 64.6%
3783181 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 42.0 4.07e-01 94.7% 72.7%
3388724 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 44.0 4.17e-01 96.8% 74.1%
3784232 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.54 47.0 4.03e-01 94.7% 66.2%
4182070 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.54 45.0 4.08e-01 96.8% 66.9%
3606779 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 46.0 4.06e-01 94.7% 68.6%
3289254 220.1.1.82 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.53 42.0 4.20e-01 97.9% 83.2%
3173378 109.4.1.338 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIC1 0.53 33.0 2.49e-01 100.0% 24.5%
3709649 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.53 45.0 4.06e-01 95.7% 67.7%
3863194 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.53 44.0 4.01e-01 92.6% 69.2%
3893274 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 45.0 3.84e-01 94.7% 79.3%
3796013 220.1.1.176 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.52 37.0 3.33e-01 95.7% 53.8%
3412668 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.51 44.0 4.05e-01 93.6% 75.0%
3572060 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.51 43.0 3.97e-01 95.7% 72.5%
4012633 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.51 45.0 3.72e-01 96.8% 69.1%
3250605 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.51 42.0 3.89e-01 92.6% 69.6%
3964724 3675.1.1.1 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert 0.51 42.0 3.59e-01 98.9% 55.5%
3764969 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 40.0 3.93e-01 97.9% 76.9%
3542147 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.50 42.0 3.75e-01 93.6% 63.6%
3386302 3186.1.1.1 a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook 0.50 38.0 3.94e-01 90.4% 90.6%
3172576 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.50 44.0 4.10e-01 95.7% 80.9%
3598064 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.50 45.0 4.05e-01 96.8% 78.4%
3938170 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.50 43.0 3.78e-01 100.0% 94.7%
3493361 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.50 41.0 3.81e-01 95.7% 69.2%
D2 high residues 153-258
PDB
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l2oA00 1.10.10.1540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain 0.71 53.0 5.89e-01 100.0% 98.8%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 50.0 5.57e-01 95.3% 95.1%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 5.43e-01 98.1% 97.5%
3akjA01 3.30.200.120 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.67 39.0 4.57e-01 80.2% 82.4%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 4.62e-01 100.0% 71.4%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 41.0 4.77e-01 94.3% 90.5%
2ly1A03 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.63 41.0 4.60e-01 98.1% 87.7%
1fbqA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 5.24e-01 94.3% 100.0%
5deqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 4.68e-01 97.2% 89.2%
3qrxA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 35.0 4.19e-01 88.7% 89.7%
3oymA01 1.10.340.70 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.58 32.0 3.39e-01 82.1% 59.1%
4p55B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.87e-01 91.5% 100.0%
3buxB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 33.0 3.59e-01 91.5% 71.9%
2xgtA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 44.0 3.21e-01 91.5% 87.3%
2lfcA00 3.90.700.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C3; Chain A, domain 1 › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 0.53 45.0 4.03e-01 97.2% 93.8%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 4.36e-01 97.2% 95.6%
2w00A02 3.90.640.50 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.51 26.0 3.00e-01 76.4% 63.0%
2jugA01 1.10.10.1830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Non-ribosomal peptide synthase, adenylation domain 0.51 28.0 3.47e-01 100.0% 100.0%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3981665 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 66.0 6.51e-01 97.2% 99.1%
143797 101.1.2.149 alpha arrays › HTH › HTH › winged helix domain › Costars 0.72 52.0 5.87e-01 97.2% 98.8%
5046134 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 51.0 4.58e-01 100.0% 53.8%
1883335 101.1.2.174 alpha arrays › HTH › HTH › winged helix domain › HTH_56 0.71 62.0 6.27e-01 100.0% 95.2%
4997255 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 51.0 5.24e-01 100.0% 80.0%
4939871 101.1.2.896 alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.67 47.0 4.74e-01 100.0% 72.4%
3670673 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.67 47.0 4.68e-01 100.0% 70.0%
3581762 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 49.0 5.02e-01 100.0% 79.0%
3181298 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 47.0 4.63e-01 98.1% 67.8%
4947062 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 47.0 4.98e-01 100.0% 83.2%
4973869 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 45.0 4.84e-01 100.0% 83.3%
5045747 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 46.0 4.92e-01 98.1% 85.6%
3936891 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 48.0 5.04e-01 100.0% 86.3%
3633871 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 4.20e-01 100.0% 44.0%
5025840 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 5.06e-01 99.1% 85.0%
3240179 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 5.01e-01 100.0% 81.9%
4966558 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 45.0 4.93e-01 100.0% 89.4%
5064203 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 44.0 4.76e-01 100.0% 84.4%
2056399 101.1.2.213 alpha arrays › HTH › HTH › winged helix domain › NrtR_WHD 0.63 40.0 4.60e-01 91.5% 89.5%
3810002 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.63 48.0 4.80e-01 100.0% 78.2%
5077356 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 4.62e-01 100.0% 70.4%
5062512 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.59 35.0 3.51e-01 91.5% 57.1%
2056822 101.1.2.213 alpha arrays › HTH › HTH › winged helix domain › NrtR_WHD 0.59 39.0 4.42e-01 91.5% 94.7%
3930041 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 49.0 5.04e-01 99.1% 93.0%
3505855 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.59 41.0 4.55e-01 89.6% 96.2%
3942921 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 53.0 4.18e-01 100.0% 74.4%
3797519 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 52.0 3.27e-01 100.0% 30.3%
3413597 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.57 52.0 3.60e-01 100.0% 45.5%
5003912 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 50.0 4.32e-01 99.1% 79.4%
3321355 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.55 27.0 3.14e-01 98.1% 64.3%
3203027 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.54 26.0 3.28e-01 98.1% 76.7%
3373665 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 40.0 2.69e-01 83.0% 45.8%