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IMGVR_UViG_3300000563_000521-3300000563-SL_3KL_010_SEDDRAFT_100014122
Arc-VirIMGVR_UViG_3300000563_000521-3300000563-SL_3KL_010_SEDDRAFT_100014122
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-69
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3u60A02 | 1.20.272.50 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › Bacteriophage clamp loader A subunit, A' domain | 0.86 | 76.0 | 7.15e-01 | 100.0% | 80.8% |
| 2qw6D00 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.72 | 62.0 | 5.78e-01 | 100.0% | 90.7% |
| 2lwdA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.70 | 54.0 | 4.89e-01 | 88.1% | 60.4% |
| 3agtA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.60 | 51.0 | 4.18e-01 | 98.5% | 65.4% |
| 1omvA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.59 | 44.0 | 4.16e-01 | 83.6% | 83.7% |
| 1vb5A01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.59 | 50.0 | 4.54e-01 | 98.5% | 93.6% |
| 1vhnA02 | 1.10.1200.80 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 | 0.58 | 46.0 | 4.59e-01 | 91.0% | 91.5% |
| 3bgvD00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 43.0 | 2.93e-01 | 80.6% | 92.9% |
| 4iu9A00 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.58 | 47.0 | 3.06e-01 | 100.0% | 82.6% |
| 2p0nA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.58 | 48.0 | 3.75e-01 | 98.5% | 82.6% |
| 2wcjA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.57 | 48.0 | 3.92e-01 | 100.0% | 84.4% |
| 8etcb01 | 1.20.120.1190 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.57 | 46.0 | 3.71e-01 | 94.0% | 86.3% |
| 2e87A01 | 1.20.120.1190 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 44.0 | 3.47e-01 | 98.5% | 86.9% |
| 1qlbA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.53 | 39.0 | 3.33e-01 | 80.6% | 61.0% |
| 6j9eD01 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.52 | 36.0 | 3.02e-01 | 71.6% | 55.9% |
| 2gxaE01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 0.52 | 35.0 | 3.44e-01 | 82.1% | 64.4% |
| 5nl6A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 37.0 | 3.30e-01 | 80.6% | 77.8% |
| 1yvwA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.50 | 34.0 | 3.14e-01 | 70.1% | 58.7% |
| 1sj8A02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.50 | 38.0 | 3.24e-01 | 85.1% | 63.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3926779 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.70 | 55.0 | 4.66e-01 | 85.1% | 63.6% |
| 4954763 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.63 | 46.0 | 4.24e-01 | 79.1% | 78.9% |
| 4099883 | 11.1.1.154 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgE_dom_N_S | 0.61 | 52.0 | 3.83e-01 | 98.5% | 35.8% |
| 3213348 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.59 | 42.0 | 3.44e-01 | 76.1% | 67.4% |
| 3208120 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.59 | 42.0 | 3.34e-01 | 77.6% | 56.8% |
| 3536637 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.59 | 42.0 | 3.36e-01 | 76.1% | 62.2% |
| 4557092 | 633.23.1.32 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › CASP_dom | 0.58 | 40.0 | 3.16e-01 | 73.1% | 62.8% |
| 3420023 | 633.21.1.18 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom | 0.58 | 42.0 | 3.17e-01 | 76.1% | 57.6% |
| 3413235 | 309.1.1.6 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C,Peptidase_M16_M | 0.57 | 45.0 | 3.16e-01 | 88.1% | 50.6% |
| 5053937 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.55 | 45.0 | 4.27e-01 | 95.5% | 96.5% |
| 3290024 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.55 | 36.0 | 3.43e-01 | 100.0% | 56.2% |
| 3215741 | 309.1.1.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase | 0.54 | 45.0 | 3.34e-01 | 95.5% | 70.5% |
| 3990657 | 544.1.1.0 ↗ | alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 | 0.54 | 37.0 | 3.09e-01 | 71.6% | 86.9% |
| 3280209 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.54 | 42.0 | 2.93e-01 | 89.6% | 87.5% |
| 3395101 | 309.1.1.8 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_M | 0.53 | 42.0 | 3.01e-01 | 94.0% | 51.2% |
D2
high
residues 94-153
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.54 | 37.0 | 3.03e-01 | 91.7% | 35.5% |