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IMGVR_UViG_3300000563_000521-3300000563-SL_3KL_010_SEDDRAFT_1000141227

Arc-Vir

IMGVR_UViG_3300000563_000521-3300000563-SL_3KL_010_SEDDRAFT_1000141227

Quality

94.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-73
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.75 45.0 3.86e-01 74.0% 38.6%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.74 45.0 3.83e-01 74.0% 37.8%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.73 52.0 4.06e-01 75.3% 40.0%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.73 43.0 3.49e-01 71.2% 32.8%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.70 49.0 4.43e-01 74.0% 70.0%
1okjB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.70 46.0 3.87e-01 75.3% 39.4%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.69 42.0 3.57e-01 98.6% 37.8%
1skoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.69 43.0 3.66e-01 72.6% 39.7%
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.67 40.0 3.46e-01 71.2% 37.1%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.67 45.0 4.50e-01 76.7% 67.6%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.65 54.0 4.50e-01 89.0% 71.3%
2jtdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 46.0 3.89e-01 75.3% 63.1%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.64 44.0 3.94e-01 72.6% 57.0%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.64 44.0 3.97e-01 71.2% 69.0%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 35.0 3.83e-01 72.6% 63.9%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 39.0 3.25e-01 75.3% 32.9%
3lm3A02 3.30.1120.110 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.61 42.0 3.71e-01 71.2% 67.3%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 54.0 3.51e-01 100.0% 91.5%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.60 42.0 3.98e-01 74.0% 61.4%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.58 42.0 3.53e-01 79.5% 94.2%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 48.0 3.99e-01 90.4% 68.5%
1h8mA00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.57 40.0 3.28e-01 72.6% 95.7%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 41.0 4.52e-01 76.7% 100.0%
2qq6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 47.0 4.02e-01 91.8% 64.7%
8f5dA05 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.56 48.0 3.45e-01 95.9% 95.5%
3zm6A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.56 47.0 3.39e-01 94.5% 90.1%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 3.85e-01 90.4% 68.8%
4qdiA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.56 47.0 3.37e-01 94.5% 57.6%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 44.0 3.64e-01 89.0% 64.5%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 45.0 3.66e-01 89.0% 66.7%
3i7fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 44.0 3.67e-01 86.3% 64.8%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.55 48.0 3.87e-01 97.3% 65.7%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 46.0 4.14e-01 97.3% 78.1%
3mcpA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 44.0 3.92e-01 91.8% 90.2%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.30e-01 74.0% 45.5%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 3.68e-01 91.8% 70.6%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 36.0 3.11e-01 71.2% 71.3%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 39.0 3.43e-01 78.1% 86.5%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 47.0 3.17e-01 97.3% 32.8%
1w63Q00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 43.0 3.56e-01 95.9% 98.6%
3lm2A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 43.0 3.98e-01 91.8% 89.7%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 38.0 3.11e-01 76.7% 56.0%
2l72A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 37.0 3.18e-01 74.0% 82.2%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.51 41.0 3.34e-01 90.4% 73.1%
2pvaA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.51 43.0 2.88e-01 98.6% 47.1%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 36.0 3.38e-01 76.7% 97.8%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.50 43.0 3.57e-01 98.6% 93.4%
4fvaC00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.50 38.0 2.74e-01 86.3% 65.7%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 37.0 3.45e-01 89.0% 61.9%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4996048 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.82 49.0 3.96e-01 74.0% 33.8%
5063657 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.79 47.0 3.91e-01 72.6% 36.1%
5079224 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.77 45.0 3.88e-01 72.6% 37.4%
5038289 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.75 44.0 3.53e-01 72.6% 31.1%
4964148 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.74 45.0 3.76e-01 74.0% 36.7%
5072327 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.74 45.0 3.68e-01 72.6% 33.3%
3925335 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.73 44.0 3.63e-01 72.6% 34.4%
5075279 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.73 44.0 3.73e-01 71.2% 38.3%
5071984 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.73 45.0 3.64e-01 72.6% 32.9%
4182580 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.73 43.0 3.52e-01 72.6% 33.1%
5000881 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 44.0 3.45e-01 71.2% 29.0%
4945232 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 44.0 3.67e-01 74.0% 36.7%
4950433 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 43.0 3.69e-01 72.6% 38.1%
4972333 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 43.0 3.61e-01 72.6% 35.2%
4945712 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 43.0 3.60e-01 74.0% 35.2%
3461881 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.71 42.0 3.52e-01 72.6% 34.4%
3971508 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.70 47.0 3.47e-01 72.6% 26.8%
3952658 2484.1.1.113 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › baeRF_family2 0.70 58.0 4.80e-01 89.0% 78.4%
3490881 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.70 44.0 3.66e-01 72.6% 37.1%
5007927 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 60.0 4.82e-01 91.8% 57.9%
4962224 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.70 46.0 3.48e-01 75.3% 28.8%
4944313 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 43.0 3.55e-01 72.6% 33.3%
5000498 896.1.1.1 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.70 43.0 4.74e-01 75.3% 76.7%
5074437 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 42.0 3.76e-01 71.2% 42.9%
4029539 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 41.0 3.44e-01 72.6% 35.8%
3958788 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 55.0 4.72e-01 86.3% 69.1%
4002066 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 42.0 3.45e-01 72.6% 34.1%
5061635 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 43.0 2.57e-01 76.7% 8.6%
5013176 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.66 46.0 4.64e-01 75.3% 72.0%
4034138 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.65 46.0 3.79e-01 74.0% 85.7%
5015133 4100.1.1.9 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.65 35.0 3.86e-01 71.2% 63.3%
4933539 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.65 53.0 3.80e-01 89.0% 65.1%
3705153 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 41.0 3.32e-01 76.7% 34.8%
3219528 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.64 40.0 3.37e-01 72.6% 37.5%
3498084 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.63 47.0 3.10e-01 79.5% 31.9%
3437716 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.62 54.0 4.52e-01 95.9% 89.4%
3670595 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 47.0 4.36e-01 83.6% 69.5%
5818 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.61 44.0 3.86e-01 76.7% 55.4%
3863194 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.61 42.0 3.48e-01 71.2% 90.0%
3810543 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.61 41.0 3.61e-01 72.6% 46.4%
4244036 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 50.0 3.90e-01 90.4% 65.8%
1758788 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.60 41.0 3.51e-01 72.6% 65.0%
3367922 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.60 44.0 4.09e-01 79.5% 89.5%
3234330 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 51.0 4.43e-01 94.5% 78.2%
4108829 2484.1.1.144 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.59 50.0 4.21e-01 91.8% 61.7%
4944516 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 41.0 3.38e-01 72.6% 97.0%
3839740 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.58 42.0 3.41e-01 76.7% 55.0%
3802643 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 44.0 4.06e-01 83.6% 69.5%
3233005 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.56 47.0 3.22e-01 91.8% 37.3%
4983641 2484.1.1.49 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.56 47.0 3.71e-01 90.4% 60.7%
3567966 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.56 44.0 4.10e-01 87.7% 93.7%
3333247 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.56 40.0 2.45e-01 76.7% 79.5%
4024647 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 45.0 3.09e-01 95.9% 56.8%
3671668 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 47.0 3.60e-01 98.6% 70.8%
3706768 3407.1.1.0 mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.55 45.0 3.72e-01 91.8% 63.7%
4043415 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 42.0 2.66e-01 89.0% 15.7%
4600223 616.1.1.33 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › UPF0262 0.54 46.0 3.67e-01 94.5% 66.9%
5014023 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 43.0 3.22e-01 89.0% 60.9%
3591940 223.2.1.19 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.52 44.0 3.27e-01 93.2% 49.5%
4961481 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.52 40.0 4.06e-01 93.2% 90.0%
3882038 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.52 41.0 3.27e-01 87.7% 87.1%
3408369 284.1.3.4 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.52 41.0 4.09e-01 90.4% 84.0%
4937958 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.51 41.0 2.72e-01 89.0% 68.6%
3401966 2.1.1.350 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30298 0.51 37.0 2.87e-01 78.1% 60.0%
5032865 244.2.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.51 39.0 3.62e-01 83.6% 100.0%
5045968 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.51 41.0 2.60e-01 95.9% 18.0%
3980114 3860.1.1.158 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE 0.51 40.0 3.24e-01 91.8% 42.7%
5010017 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.51 42.0 3.00e-01 91.8% 91.4%
4943538 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.50 42.0 2.70e-01 97.3% 41.0%