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IMGVR_UViG_3300000563_000521-3300000563-SL_3KL_010_SEDDRAFT_1000141235

Arc-Vir

IMGVR_UViG_3300000563_000521-3300000563-SL_3KL_010_SEDDRAFT_1000141235

Quality

86.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-88
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tqtA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.69 46.0 5.03e-01 92.9% 85.3%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 46.0 4.37e-01 72.9% 80.8%
1r6vA02 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.65 48.0 5.02e-01 78.8% 96.2%
4i0wA00 3.30.70.2980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 52.0 5.06e-01 89.4% 89.1%
2uvaG03 3.30.70.3320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 47.0 4.41e-01 83.5% 92.6%
1f08B00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.60 43.0 3.68e-01 76.5% 56.6%
3devA02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.57 45.0 4.12e-01 87.1% 87.1%
1sbxA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.56 39.0 3.71e-01 72.9% 84.9%
1ayeA01 3.30.70.340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like 0.56 40.0 3.89e-01 77.6% 68.7%
6spbZ00 3.30.1390.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 0.55 36.0 4.08e-01 72.9% 100.0%
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.54 38.0 3.60e-01 72.9% 90.1%
1t8rA01 3.30.1730.10 Alpha Beta › 2-Layer Sandwich › amp nucleosidase, domain 1 › AMP nucleoside phosphorylase, N-terminal domain 0.53 41.0 3.45e-01 84.7% 70.9%
1vw4U00 3.30.1390.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 0.52 34.0 3.53e-01 72.9% 70.7%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.52 42.0 3.18e-01 89.4% 83.6%
4y4mC00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 41.0 3.06e-01 94.1% 81.6%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4309134 304.11.1.2 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › SAT 0.66 48.0 5.13e-01 76.5% 98.7%
5039174 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.65 44.0 5.02e-01 72.9% 98.3%
4965616 304.24.1.39 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF790 0.65 51.0 4.54e-01 85.9% 76.8%
5078721 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.64 53.0 5.11e-01 90.6% 88.4%
5045569 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.63 51.0 5.31e-01 89.4% 100.0%
5052390 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.62 48.0 4.95e-01 84.7% 95.0%
1820946 304.7.1.13 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Fervidolysin_NPro-like 0.57 49.0 4.69e-01 94.1% 85.6%
3190884 2004.1.1.36 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.57 51.0 3.19e-01 100.0% 23.2%
3888996 101.1.9.4 alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.57 39.0 3.84e-01 71.8% 93.7%
5038109 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.56 41.0 3.46e-01 80.0% 45.5%
3263724 887.1.1.1 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.55 39.0 4.01e-01 76.5% 79.7%
4033357 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.55 43.0 3.94e-01 87.1% 85.6%
4119217 887.1.1.1 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.55 37.0 4.09e-01 77.6% 95.3%
1759006 887.1.1.1 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.54 36.0 4.07e-01 72.9% 98.3%
3684485 887.1.1.1 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.54 38.0 3.81e-01 76.5% 71.1%
4038263 887.1.1.1 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.54 36.0 4.01e-01 72.9% 98.3%
4347806 887.1.1.1 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.54 36.0 4.05e-01 74.1% 100.0%
4013619 887.1.1.0 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e 0.53 36.0 3.68e-01 72.9% 73.8%
1420607 887.1.1.1 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.53 35.0 3.95e-01 72.9% 98.3%
3410775 887.1.1.1 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.53 43.0 3.77e-01 94.1% 67.1%
4975283 4271.1.1.3 alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.53 43.0 3.21e-01 91.8% 80.0%
4941141 2003.1.2.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Thi4 0.53 41.0 2.99e-01 88.2% 87.5%
3712193 887.1.1.0 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e 0.52 36.0 3.52e-01 76.5% 64.2%
4874450 182.1.2.3 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Fe-S cluster domain of DNA primase › PF26466 0.52 42.0 3.12e-01 91.8% 82.7%
3080544 887.1.1.1 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.51 39.0 3.77e-01 94.1% 72.0%
4946919 4271.1.1.0 alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like 0.51 41.0 3.24e-01 94.1% 55.2%
2557261 807.1.1.1 a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.50 35.0 3.48e-01 78.8% 67.4%
3591757 4271.1.1.3 alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.50 41.0 3.07e-01 94.1% 52.7%
3585683 10.12.1.9 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC 0.50 39.0 2.64e-01 98.8% 20.6%
D2 medium residues 89-322
PDB
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g71A01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.79 44.0 4.42e-01 76.5% 54.2%
1z1dB00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.70 33.0 4.39e-01 70.9% 80.9%
4bpuC00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.65 50.0 4.25e-01 78.6% 78.2%
4limA00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.65 50.0 4.16e-01 78.6% 79.0%
1r89A03 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.60 34.0 4.40e-01 76.9% 95.5%
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 20.0 3.65e-01 80.3% 98.7%
5yjlB01 3.30.460.30 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain 0.56 34.0 3.96e-01 70.5% 85.1%
2atzA00 3.90.920.20 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like 0.55 39.0 4.50e-01 94.4% 96.0%
2qyxB01 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.54 27.0 3.77e-01 73.9% 99.1%
2faoA01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.54 51.0 4.74e-01 100.0% 89.4%
1m55A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.53 38.0 4.18e-01 76.9% 88.1%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004227 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.80 59.0 5.80e-01 100.0% 70.8%
4650634 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.78 46.0 4.52e-01 76.5% 54.8%
5069642 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.78 47.0 4.87e-01 76.5% 63.6%
4274062 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.77 47.0 4.60e-01 76.5% 56.4%
4998612 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.77 48.0 4.84e-01 76.5% 61.7%
3589190 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.73 49.0 4.97e-01 87.6% 68.3%
5026687 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.71 56.0 5.32e-01 85.0% 69.5%
4983703 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.70 55.0 5.31e-01 85.0% 71.7%
4993038 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.70 47.0 4.56e-01 76.5% 60.6%
4984518 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.69 54.0 5.18e-01 85.0% 70.7%
4038221 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.68 47.0 4.67e-01 76.5% 66.7%
4937156 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.66 56.0 5.23e-01 87.6% 76.4%
5037338 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.66 54.0 5.19e-01 84.6% 75.5%
4956744 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.66 48.0 4.69e-01 76.5% 68.2%
4946875 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.64 47.0 4.52e-01 76.1% 65.7%
4044908 304.8.1.62 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › CitX 0.63 32.0 3.76e-01 77.8% 67.1%
3389107 304.9.1.95 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4780 0.62 30.0 4.23e-01 72.2% 97.1%
3692641 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.62 48.0 4.49e-01 78.6% 70.3%
4973338 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.62 47.0 4.35e-01 76.5% 68.4%
3921299 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.62 48.0 4.32e-01 78.6% 71.9%
4197700 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.62 47.0 4.41e-01 76.1% 68.7%
5010675 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.62 47.0 4.51e-01 76.5% 70.8%
3278096 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.62 48.0 4.23e-01 78.2% 75.0%
4940975 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.62 46.0 4.27e-01 76.5% 79.3%
4989296 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.62 47.0 4.34e-01 77.4% 92.1%
None 0.62 47.0 4.26e-01 78.2% 77.1%
3959043 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.62 51.0 4.55e-01 86.3% 79.7%
2711606 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.62 51.0 4.50e-01 86.3% 77.8%
3284431 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.61 50.0 4.54e-01 84.6% 81.3%
4987159 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.61 48.0 4.61e-01 79.9% 86.5%
None 0.61 51.0 4.58e-01 86.3% 82.3%
4968297 304.4.1.2 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › MIase 0.61 25.0 3.88e-01 70.1% 97.6%
4960009 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.60 48.0 4.43e-01 81.6% 85.6%
4962169 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.59 44.0 4.49e-01 76.1% 81.5%
5004945 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.59 45.0 4.34e-01 76.5% 78.0%
3602638 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 51.0 4.24e-01 91.0% 62.7%
7175 862.1.1.2 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DUF1882 0.55 39.0 4.50e-01 94.4% 96.0%
5000831 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.54 51.0 4.79e-01 99.1% 94.5%
4986859 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.54 51.0 4.66e-01 99.6% 85.1%
1779551 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.54 51.0 4.67e-01 100.0% 85.4%
3826486 304.9.1.114 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1, RRM_2 0.54 32.0 3.82e-01 70.5% 86.5%
5066297 862.1.1.5 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.53 49.0 4.68e-01 100.0% 91.6%
3971634 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.51 26.0 2.89e-01 76.5% 60.3%