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IMGVR_UViG_3300000563_000979-3300000563-SL_3KL_010_SEDDRAFT_100090073

Arc-Vir

IMGVR_UViG_3300000563_000979-3300000563-SL_3KL_010_SEDDRAFT_100090073

Quality

84.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-115
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.83 42.0 4.75e-01 70.4% 63.7%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.79 51.0 5.16e-01 78.3% 65.5%
4wpeA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.76 59.0 4.37e-01 80.9% 47.3%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.76 54.0 5.58e-01 80.9% 77.8%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.74 55.0 5.93e-01 96.5% 91.8%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 51.0 4.63e-01 87.0% 53.9%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 50.0 5.26e-01 72.2% 88.7%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 40.0 5.02e-01 75.7% 100.0%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.70 53.0 4.68e-01 80.9% 55.9%
1a7eA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.70 45.0 4.50e-01 79.1% 63.6%
2i0mA02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.69 54.0 5.72e-01 80.9% 92.1%
2zw3A00 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.68 57.0 4.66e-01 88.7% 69.7%
2ch7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.68 52.0 3.79e-01 80.9% 65.0%
2efkA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.68 52.0 3.93e-01 80.0% 40.8%
3zciA00 1.20.58.1660 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 62.0 5.21e-01 100.0% 77.0%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 51.0 5.27e-01 78.3% 90.8%
2qupA00 1.20.120.490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain 0.67 47.0 4.72e-01 82.6% 69.7%
3nftA00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.67 51.0 3.85e-01 79.1% 62.2%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.67 56.0 5.59e-01 88.7% 94.8%
1h6gA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.67 53.0 5.18e-01 84.3% 76.6%
7fhyB01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.67 45.0 3.32e-01 77.4% 27.1%
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.66 40.0 4.74e-01 71.3% 90.8%
7aalA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.66 54.0 4.12e-01 87.8% 54.5%
3jysA01 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 55.0 4.34e-01 89.6% 98.2%
2oc5A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.64 51.0 4.09e-01 83.5% 65.6%
7p3rA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.64 56.0 4.05e-01 95.7% 87.7%
3io5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 34.0 2.59e-01 74.8% 21.8%
1wp1B01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.64 58.0 4.05e-01 100.0% 63.5%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.63 44.0 4.96e-01 79.1% 91.2%
6l3tA01 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.62 49.0 4.14e-01 86.1% 67.3%
1ek9A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.59 53.0 3.63e-01 100.0% 63.1%
3ajmB02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.59 44.0 4.20e-01 83.5% 67.7%
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.58 46.0 3.49e-01 82.6% 44.7%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.57 46.0 4.09e-01 86.1% 77.3%
6xj1A01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.55 50.0 3.90e-01 99.1% 93.1%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.53 40.0 3.53e-01 80.0% 100.0%
4yonA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.52 46.0 3.73e-01 95.7% 98.6%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.65e-01 73.0% 96.7%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 39.0 3.52e-01 86.1% 60.7%
4djhA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 42.0 3.16e-01 90.4% 49.8%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3775175 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.88 38.0 4.12e-01 95.7% 50.0%
4940427 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.81 52.0 6.36e-01 80.9% 100.0%
3586169 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.77 65.0 6.03e-01 93.0% 72.9%
4259368 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.74 58.0 5.73e-01 80.9% 86.7%
5056727 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.73 59.0 4.79e-01 84.3% 100.0%
4181293 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.72 53.0 5.47e-01 75.7% 89.1%
3234976 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.72 55.0 5.61e-01 80.9% 81.8%
3270487 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.72 53.0 5.44e-01 75.7% 89.1%
4467663 601.51.1.2 alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin › Flagellin_N,Flagellin_C 0.72 56.0 4.10e-01 80.9% 65.0%
1000517 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.71 50.0 5.39e-01 72.2% 93.1%
3594965 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.71 54.0 5.08e-01 80.0% 83.6%
3691694 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.71 55.0 5.38e-01 80.9% 77.6%
3415741 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.71 55.0 5.04e-01 80.9% 80.7%
5041857 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.70 55.0 5.12e-01 80.9% 81.3%
3498332 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.70 58.0 5.27e-01 87.0% 78.7%
4994900 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.70 52.0 5.02e-01 75.7% 86.4%
3935332 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.70 49.0 4.68e-01 71.3% 71.5%
5083210 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.70 54.0 5.55e-01 82.6% 84.5%
3787269 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.70 52.0 5.36e-01 80.0% 80.9%
3603411 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.69 54.0 5.08e-01 80.9% 81.5%
3396714 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.69 54.0 4.91e-01 80.9% 79.3%
3394225 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.69 52.0 5.21e-01 77.4% 87.0%
4955870 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.68 54.0 4.61e-01 83.5% 55.0%
4977598 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.68 51.0 5.27e-01 80.0% 81.8%
3990696 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.68 53.0 4.31e-01 80.9% 65.0%
4944677 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.68 54.0 5.77e-01 84.3% 100.0%
3611017 1189.1.1.6 alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › ISG65-75 0.67 62.0 4.63e-01 100.0% 89.8%
3234426 174.1.1.14 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › NKAIN 0.67 52.0 4.65e-01 82.6% 81.2%
3859550 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 50.0 4.92e-01 77.4% 82.5%
3586391 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.66 59.0 4.33e-01 98.3% 82.6%
3991750 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.66 59.0 4.36e-01 99.1% 77.7%
3254236 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.66 49.0 5.09e-01 76.5% 85.7%
4453346 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 50.0 3.62e-01 80.0% 34.5%
5035198 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 45.0 3.76e-01 71.3% 92.1%
3586018 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.64 50.0 4.65e-01 80.9% 95.0%
3903910 7015.1.1.0 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.63 53.0 4.42e-01 88.7% 70.0%
3866266 109.4.1.451 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Iml2-TPR_39 0.63 51.0 3.71e-01 87.0% 38.1%
3304960 109.4.1.94 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANTH 0.62 50.0 4.48e-01 85.2% 95.0%
3578921 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.62 55.0 3.91e-01 100.0% 69.3%
3523297 7015.1.1.0 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.62 48.0 4.32e-01 80.9% 85.2%
3741268 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.62 47.0 4.08e-01 79.1% 81.7%
3468700 109.4.1.368 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SHNi-TPR 0.62 57.0 4.09e-01 97.4% 39.7%
3798829 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.61 52.0 4.15e-01 91.3% 56.4%
3749051 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.60 49.0 3.79e-01 87.0% 83.1%
3580612 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.60 50.0 4.52e-01 88.7% 83.9%
4489885 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.60 47.0 4.19e-01 81.7% 58.7%
3789282 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 47.0 3.10e-01 83.5% 22.9%
3873955 7016.1.1.0 extended segments › Palmitoyltransferase DHHC C-terminal domain › Palmitoyltransferase DHHC C-terminal domain › Palmitoyltransferase DHHC C-terminal domain 0.60 48.0 4.33e-01 85.2% 83.2%
3969345 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.59 42.0 3.40e-01 73.9% 38.6%
4021113 601.1.1.90 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF3433 0.59 52.0 4.57e-01 98.3% 77.1%
4325844 5085.1.1.2 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › PF27489, PF29296 0.58 49.0 3.26e-01 92.2% 58.7%
3883169 5001.1.1.3 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.57 51.0 3.77e-01 93.0% 47.8%
5058199 4070.1.1.2 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.57 45.0 3.70e-01 86.1% 67.0%
3234667 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.56 49.0 3.51e-01 94.8% 40.6%
3463054 5050.1.1.108 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PUCC, Nodulin-like, NFD4_C 0.56 48.0 3.10e-01 93.0% 90.5%
4030200 109.4.1.3075 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, Xpo1, CRM1_C, CRM1_repeat_2, CRM1_repeat_3 0.55 45.0 2.60e-01 88.7% 14.0%
3236426 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.55 46.0 3.31e-01 92.2% 62.9%
3778175 5052.1.1.1 alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF 0.55 46.0 3.07e-01 90.4% 74.2%
3512028 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.55 44.0 3.33e-01 85.2% 67.4%
3234524 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.54 46.0 3.84e-01 89.6% 72.6%
3515942 7516.1.1.82 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Chitin_synth_2 0.54 49.0 2.96e-01 98.3% 66.4%
3368067 109.4.1.583 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi 0.53 43.0 3.13e-01 86.1% 33.2%
3348024 109.4.1.583 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi 0.53 43.0 3.94e-01 86.1% 68.0%
4990006 3355.1.1.14 alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › Lactate_perm 0.52 43.0 2.83e-01 87.8% 75.2%
3305434 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 25.0 2.83e-01 83.5% 56.7%
3937938 109.4.1.47 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N,Xpo1,CRM1_C,CRM1_repeat,CRM1_repeat_2,CRM1_repeat_3 0.50 41.0 2.37e-01 87.0% 13.0%