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IMGVR_UViG_3300000568_000019-3300000568-Draft_1000662817

Arc-Vir

IMGVR_UViG_3300000568_000019-3300000568-Draft_1000662817

Identity

Kingdom:
archaea

Quality

70.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-132
PDB
Domain cluster: rep: NC_048739.1__YP_009842153.1__HWB95_gp05__00005__D64-156
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 36.0 4.45e-01 98.1% 76.2%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 35.0 4.33e-01 98.1% 72.7%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 45.0 5.09e-01 100.0% 100.0%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.60 25.0 3.21e-01 100.0% 64.9%
8c5yA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 52.0 4.45e-01 97.1% 81.8%
4pqxA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.57 38.0 4.40e-01 100.0% 98.6%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.53 27.0 3.16e-01 92.3% 69.7%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 33.0 3.57e-01 100.0% 77.1%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.52 41.0 4.14e-01 84.6% 85.0%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.50 31.0 2.98e-01 96.2% 51.2%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946199 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.67 37.0 4.30e-01 76.0% 76.0%
5021275 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 59.0 5.78e-01 99.0% 96.4%
3917310 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.64 35.0 4.20e-01 92.3% 83.1%
5078764 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 53.0 5.07e-01 98.1% 80.0%
3661649 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.62 55.0 4.90e-01 97.1% 84.5%
4948171 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 53.0 4.75e-01 97.1% 99.3%
5016164 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 54.0 4.83e-01 100.0% 83.4%
3603239 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.59 53.0 4.71e-01 100.0% 82.7%
5058144 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 52.0 4.74e-01 98.1% 100.0%
5077957 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.58 51.0 4.81e-01 99.0% 85.4%
3221671 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 42.0 4.32e-01 76.0% 88.0%
3098015 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.58 51.0 4.30e-01 99.0% 79.7%
5035746 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 51.0 4.51e-01 100.0% 80.0%
4272864 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 46.0 4.36e-01 100.0% 75.0%
3931737 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 39.0 4.36e-01 96.2% 92.5%
4947833 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.85e-01 76.9% 64.8%
3250605 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 43.0 4.11e-01 89.4% 94.4%
3591102 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.53 43.0 3.85e-01 89.4% 93.3%
3264336 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.52 42.0 4.49e-01 98.1% 100.0%
5055109 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.52 34.0 3.60e-01 94.2% 75.6%
3243872 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 37.0 2.75e-01 74.0% 37.5%
3614913 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.52 33.0 3.59e-01 96.2% 78.8%
3460645 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.52 42.0 2.89e-01 88.5% 33.9%
3502587 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.51 33.0 3.31e-01 97.1% 63.8%
3932882 2.1.1.81 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.51 36.0 3.94e-01 98.1% 95.0%
5036880 330.1.1.35 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › LeuA_dimer 0.51 31.0 3.65e-01 83.7% 91.4%
3660107 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.50 41.0 3.79e-01 91.3% 95.7%
3505730 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 35.0 2.94e-01 74.0% 56.8%