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IMGVR_UViG_3300000568_000023-3300000568-Draft_1000729818
Arc-VirIMGVR_UViG_3300000568_000023-3300000568-Draft_1000729818
Identity
- Kingdom:
- archaea
Quality
56.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 689-780
D2
high
residues 782-857
Domain cluster:
representative
CATH (58)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dq0A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.84 | 58.0 | 5.08e-01 | 71.1% | 53.3% |
| 4r42A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.80 | 73.0 | 5.36e-01 | 98.7% | 85.0% |
| 1jkvA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.80 | 72.0 | 5.29e-01 | 100.0% | 88.8% |
| 3qkyA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.80 | 70.0 | 4.80e-01 | 100.0% | 29.1% |
| 1vjxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.80 | 71.0 | 5.63e-01 | 97.4% | 96.0% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.80 | 55.0 | 5.15e-01 | 71.1% | 62.2% |
| 1fpoC02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.79 | 66.0 | 6.18e-01 | 89.5% | 91.2% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.79 | 66.0 | 6.69e-01 | 92.1% | 96.0% |
| 3hiuD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.79 | 70.0 | 5.60e-01 | 100.0% | 92.1% |
| 3zheD01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.78 | 60.0 | 4.29e-01 | 94.7% | 29.8% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.78 | 72.0 | 6.58e-01 | 100.0% | 82.5% |
| 1k04A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.78 | 54.0 | 4.81e-01 | 71.1% | 52.9% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.78 | 54.0 | 4.55e-01 | 72.4% | 54.0% |
| 4hwdD00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.78 | 70.0 | 6.56e-01 | 97.4% | 98.9% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.77 | 65.0 | 5.36e-01 | 93.4% | 95.7% |
| 1xzpA02 | 1.20.120.430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 | 0.77 | 71.0 | 5.39e-01 | 100.0% | 63.9% |
| 3uumA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 68.0 | 5.83e-01 | 98.7% | 86.9% |
| 1dpsA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.77 | 68.0 | 5.28e-01 | 97.4% | 87.4% |
| 4wzxA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.76 | 66.0 | 6.67e-01 | 94.7% | 100.0% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.76 | 65.0 | 5.43e-01 | 96.1% | 96.3% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.76 | 55.0 | 6.02e-01 | 90.8% | 95.1% |
| 7qihA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.75 | 50.0 | 4.59e-01 | 85.5% | 52.5% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.75 | 44.0 | 4.47e-01 | 71.1% | 59.2% |
| 2b0hA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.74 | 65.0 | 5.41e-01 | 96.1% | 68.0% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 62.0 | 6.03e-01 | 96.1% | 83.5% |
| 2vxgA02 | 1.10.220.100 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 | 0.73 | 57.0 | 5.49e-01 | 82.9% | 78.8% |
| 4abxA02 | 6.10.140.1090 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 50.0 | 4.79e-01 | 71.1% | 70.1% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.73 | 62.0 | 5.41e-01 | 94.7% | 67.2% |
| 2yxhA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.72 | 53.0 | 4.62e-01 | 77.6% | 55.8% |
| 2bvlA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 60.0 | 5.77e-01 | 92.1% | 82.6% |
| 4nwpD00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.71 | 62.0 | 5.03e-01 | 100.0% | 94.6% |
| 3uj9A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.71 | 57.0 | 3.91e-01 | 86.8% | 89.9% |
| 4gyvE00 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.71 | 58.0 | 4.20e-01 | 90.8% | 51.2% |
| 2fji101 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.69 | 62.0 | 4.50e-01 | 100.0% | 56.5% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 48.0 | 4.93e-01 | 72.4% | 83.1% |
| 2rpaA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.68 | 58.0 | 5.86e-01 | 96.1% | 94.8% |
| 2qgmA03 | 1.20.1440.30 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain | 0.68 | 56.0 | 4.86e-01 | 90.8% | 67.2% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.67 | 54.0 | 4.43e-01 | 84.2% | 59.2% |
| 2c0gA02 | 1.20.1150.12 | Mainly Alpha › Up-down Bundle › Endoplasmic reticulum protein erp29 › Endoplasmic reticulum resident protein 29, C-terminal domain | 0.67 | 50.0 | 4.48e-01 | 85.5% | 56.6% |
| 3u3iA02 | 1.20.58.1110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 55.0 | 4.95e-01 | 93.4% | 81.5% |
| 1l8nA03 | 3.90.1330.10 | Alpha Beta › Alpha-Beta Complex › Alpha-d-glucuronidase, C-terminal Domain › Alpha-glucuronidase, C-terminal domain | 0.64 | 54.0 | 4.08e-01 | 98.7% | 85.9% |
| 6tqpA01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.63 | 54.0 | 4.52e-01 | 97.4% | 55.1% |
| 1qguB04 | 1.20.89.10 | Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 | 0.63 | 41.0 | 4.02e-01 | 100.0% | 61.4% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.62 | 48.0 | 3.19e-01 | 81.6% | 30.3% |
| 5mlc900 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.62 | 56.0 | 4.98e-01 | 100.0% | 99.1% |
| 4me9B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 53.0 | 4.07e-01 | 98.7% | 46.8% |
| 2hjmA01 | 1.20.120.460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like | 0.62 | 54.0 | 5.21e-01 | 98.7% | 83.7% |
| 3k59A07 | 1.10.132.60 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain | 0.60 | 47.0 | 3.84e-01 | 84.2% | 97.2% |
| 2f07B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 51.0 | 3.86e-01 | 98.7% | 71.4% |
| 5ojcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 50.0 | 4.03e-01 | 94.7% | 92.2% |
| 1urvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 50.0 | 4.03e-01 | 96.1% | 94.2% |
| 5xtck00 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 50.0 | 4.62e-01 | 100.0% | 81.4% |
| 2q00B00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.56 | 45.0 | 3.94e-01 | 92.1% | 78.7% |
| 6xj1A01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.53 | 46.0 | 3.29e-01 | 100.0% | 87.8% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 47.0 | 4.36e-01 | 98.7% | 92.6% |
| 3hyuA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 44.0 | 3.60e-01 | 90.8% | 84.4% |
| 7zmgL01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 46.0 | 4.57e-01 | 97.4% | 96.2% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.52 | 42.0 | 3.80e-01 | 90.8% | 77.8% |
ECOD (61)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3836427 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.88 | 60.0 | 5.42e-01 | 71.1% | 83.0% |
| 4177393 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.87 | 60.0 | 4.69e-01 | 71.1% | 38.6% |
| 5043886 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.85 | 62.0 | 4.60e-01 | 75.0% | 33.5% |
| 4930292 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.85 | 58.0 | 6.12e-01 | 71.1% | 80.0% |
| 4027056 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.83 | 75.0 | 6.02e-01 | 97.4% | 64.3% |
| 5035200 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.83 | 57.0 | 5.81e-01 | 71.1% | 73.3% |
| 4494455 | 192.5.1.34 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › MSP1_C | 0.83 | 57.0 | 5.15e-01 | 71.1% | 88.0% |
| 4928539 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.83 | 58.0 | 4.78e-01 | 72.4% | 43.8% |
| 3341807 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.83 | 76.0 | 6.63e-01 | 100.0% | 79.1% |
| 4988301 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.83 | 57.0 | 4.44e-01 | 71.1% | 38.7% |
| 4420280 | 150.1.1.6 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Mn_catalase | 0.82 | 74.0 | 5.05e-01 | 100.0% | 69.0% |
| 3221766 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.81 | 74.0 | 6.62e-01 | 100.0% | 91.4% |
| 3333216 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.81 | 65.0 | 6.06e-01 | 86.8% | 81.1% |
| 3740779 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.81 | 65.0 | 6.57e-01 | 90.8% | 88.0% |
| 3956 | 150.1.1.6 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Mn_catalase | 0.80 | 72.0 | 4.90e-01 | 100.0% | 65.8% |
| 3411249 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.79 | 71.0 | 5.96e-01 | 100.0% | 62.3% |
| 3345315 | 604.5.1.31 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TRAM_LAG1_CLN8 | 0.79 | 70.0 | 4.78e-01 | 100.0% | 39.6% |
| 4929706 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.78 | 64.0 | 6.61e-01 | 89.5% | 100.0% |
| 3611964 | 109.4.1.95 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 | 0.78 | 67.0 | 4.43e-01 | 98.7% | 24.0% |
| 3887920 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.78 | 72.0 | 5.56e-01 | 100.0% | 76.1% |
| 3338006 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.77 | 65.0 | 5.57e-01 | 92.1% | 59.2% |
| 4112797 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.77 | 60.0 | 4.29e-01 | 80.3% | 55.9% |
| 4032384 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.77 | 63.0 | 6.24e-01 | 89.5% | 93.8% |
| 4938670 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.77 | 45.0 | 4.55e-01 | 71.1% | 58.7% |
| 3393337 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.77 | 68.0 | 4.37e-01 | 97.4% | 49.7% |
| 5067071 | 604.17.1.0 ↗ | alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like | 0.77 | 58.0 | 6.19e-01 | 81.6% | 93.8% |
| 3940580 | 604.6.1.14 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › RasGAP_C | 0.76 | 68.0 | 5.95e-01 | 100.0% | 85.2% |
| 3965260 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.76 | 62.0 | 6.03e-01 | 89.5% | 100.0% |
| 3228341 | 604.1.1.55 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › RasGAP_C | 0.75 | 68.0 | 5.88e-01 | 100.0% | 82.6% |
| 3828970 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.75 | 68.0 | 6.29e-01 | 100.0% | 92.6% |
| 5065508 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.75 | 58.0 | 5.27e-01 | 81.6% | 76.0% |
| 3696173 | 109.4.1.148 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EST1_DNA_bind,EST1 | 0.75 | 65.0 | 3.97e-01 | 100.0% | 15.9% |
| 4306296 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.75 | 53.0 | 4.03e-01 | 73.7% | 72.9% |
| 3724761 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.74 | 63.0 | 6.59e-01 | 93.4% | 100.0% |
| 4031434 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.74 | 61.0 | 5.95e-01 | 92.1% | 89.4% |
| 3580982 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.74 | 65.0 | 5.68e-01 | 100.0% | 90.4% |
| 3974601 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.72 | 60.0 | 5.33e-01 | 92.1% | 64.5% |
| 3448742 | 109.7.1.4 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › SNAP | 0.72 | 60.0 | 6.22e-01 | 92.1% | 100.0% |
| 3414731 | 109.4.1.307 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2 | 0.72 | 58.0 | 3.44e-01 | 92.1% | 12.3% |
| 3236445 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 57.0 | 4.46e-01 | 89.5% | 40.0% |
| 3581262 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.71 | 58.0 | 5.58e-01 | 92.1% | 97.8% |
| 3727500 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.70 | 58.0 | 6.01e-01 | 96.1% | 98.6% |
| 3689709 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.70 | 48.0 | 4.17e-01 | 72.4% | 50.0% |
| 223471 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.70 | 59.0 | 4.30e-01 | 94.7% | 51.4% |
| 5025786 | 7516.1.1.79 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_trans_2_3 | 0.70 | 58.0 | 3.49e-01 | 89.5% | 92.0% |
| 3450834 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.68 | 57.0 | 5.38e-01 | 96.1% | 75.5% |
| 3584622 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.67 | 58.0 | 4.14e-01 | 94.7% | 84.1% |
| 3334473 | 109.4.1.1274 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long | 0.67 | 55.0 | 3.39e-01 | 90.8% | 15.4% |
| 3445974 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.67 | 46.0 | 3.06e-01 | 71.1% | 18.7% |
| 3566627 | 604.1.1.247 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF846 | 0.67 | 52.0 | 4.80e-01 | 85.5% | 75.0% |
| 4175971 | 604.3.1.43 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › FliX | 0.64 | 50.0 | 4.79e-01 | 88.2% | 76.7% |
| 1902251 | 612.1.1.4 ↗ | alpha arrays › Retroviral matrix proteins › Retroviral matrix proteins › Retroviral matrix proteins › Gag_p10 | 0.63 | 47.0 | 4.14e-01 | 88.2% | 52.1% |
| 3719494 | 109.4.1.588 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FPL | 0.63 | 52.0 | 3.87e-01 | 93.4% | 54.6% |
| 3596737 | 604.8.1.0 ↗ | alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo | 0.59 | 54.0 | 4.49e-01 | 100.0% | 81.5% |
| 3591633 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.57 | 44.0 | 3.82e-01 | 82.9% | 55.5% |
| 3467351 | 109.4.1.1455 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27814 | 0.57 | 46.0 | 3.26e-01 | 92.1% | 56.9% |
| 5061756 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.55 | 50.0 | 4.81e-01 | 100.0% | 90.6% |
| 3581944 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.54 | 49.0 | 4.27e-01 | 100.0% | 67.0% |
| 4935180 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.54 | 44.0 | 4.05e-01 | 89.5% | 68.0% |
| 5062669 | 632.23.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I | 0.51 | 45.0 | 4.58e-01 | 96.1% | 100.0% |
| 4941193 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.50 | 44.0 | 4.30e-01 | 97.4% | 89.4% |
D3
medium
residues 115-234
Domain cluster:
rep: OR354825.1__WNM51604.1__CoNPh2_CDS0050__00048__D273-380_559-584
D4
medium
residues 235-377
Domain cluster:
rep: MZ955870.1__UAV84845.1__BV113_00510__00051__D183-343
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10145.15 best | PhageMin_Tail | 44.2 | 2.90e-11 | 80.4% | 56.7% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4cxfA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.63 | 31.0 | 3.83e-01 | 72.7% | 74.7% |
| 2l0rA00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.59 | 35.0 | 3.91e-01 | 91.6% | 75.5% |
| 3hjeA03 | 1.10.150.200 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3 | 0.55 | 34.0 | 4.10e-01 | 83.2% | 97.8% |
| 1y8aA02 | 1.10.3870.10 | Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily | 0.54 | 38.0 | 4.22e-01 | 73.4% | 97.4% |
| 3iylB02 | 1.10.2050.10 | Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 | 0.52 | 32.0 | 3.30e-01 | 86.7% | 63.4% |
| 1iv8A03 | 1.10.150.200 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3 | 0.52 | 31.0 | 3.80e-01 | 82.5% | 97.6% |
| 1tzvA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.52 | 39.0 | 4.01e-01 | 97.2% | 81.6% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4030882 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.84 | 79.0 | 6.82e-01 | 100.0% | 68.1% |
| 3516704 | 5067.1.1.5 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Sterol-sensing | 0.53 | 43.0 | 2.67e-01 | 86.0% | 65.9% |
| 4223134 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.53 | 44.0 | 4.26e-01 | 92.3% | 82.7% |
| None | — | 0.52 | 44.0 | 3.12e-01 | 92.3% | 29.1% | |
| 4032310 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.52 | 37.0 | 3.69e-01 | 73.4% | 75.3% |
| 5027837 | 3352.1.1.15 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › GT87 | 0.51 | 43.0 | 3.36e-01 | 93.0% | 85.2% |
D5
medium
residues 484-552
D6
medium
residues 623-688