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IMGVR_UViG_3300000568_000023-3300000568-Draft_100072986

Arc-Vir

IMGVR_UViG_3300000568_000023-3300000568-Draft_100072986

Identity

Kingdom:
archaea

Quality

93.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-42
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4tvcA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.64 44.0 2.88e-01 100.0% 16.0%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 39.0 3.59e-01 97.6% 44.8%
3nzkA01 3.30.230.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › lpxc deacetylase, domain 1 0.60 48.0 3.54e-01 100.0% 43.8%
3tdnA00 3.40.50.12600 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 40.0 2.92e-01 70.7% 26.4%
4yarA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 43.0 3.12e-01 78.0% 82.1%
2lleA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 42.0 2.69e-01 80.5% 22.6%
2vugA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.57 37.0 2.87e-01 70.7% 23.5%
4gtwB02 3.40.570.10 Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A 0.57 43.0 2.69e-01 87.8% 55.4%
1m0wA04 3.40.50.1760 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic 0.56 44.0 3.33e-01 100.0% 48.8%
1yaxB00 3.30.450.140 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PhoQ sensor domain 0.55 39.0 2.93e-01 85.4% 63.4%
7febA03 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.53 37.0 2.94e-01 70.7% 59.8%
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.53 37.0 3.43e-01 80.5% 96.8%
2jneA00 2.10.290.10 Mainly Beta › Ribbon › Rubredoxin-like › YfgJ-like 0.53 38.0 3.30e-01 100.0% 46.5%
1a5aB02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 40.0 2.71e-01 100.0% 67.6%
2wcyA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.52 35.0 3.08e-01 80.5% 41.3%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 36.0 2.71e-01 78.0% 96.0%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 39.0 3.14e-01 100.0% 57.8%
4j9jA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 43.0 2.74e-01 100.0% 22.5%
8c5yA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 38.0 2.59e-01 85.4% 40.0%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 42.0 3.38e-01 100.0% 61.4%
2h9aA01 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.50 41.0 2.56e-01 95.1% 83.7%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 40.0 3.30e-01 100.0% 60.9%
2j8gA02 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.50 39.0 3.18e-01 90.2% 47.6%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4235440 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 64.0 6.15e-01 100.0% 78.0%
3490047 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.78 52.0 4.66e-01 70.7% 51.7%
3511179 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 62.0 3.69e-01 100.0% 13.3%
3920656 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.74 62.0 3.53e-01 100.0% 9.3%
3872844 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 61.0 5.20e-01 100.0% 57.1%
3205074 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 59.0 5.64e-01 100.0% 78.0%
3486646 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 60.0 4.42e-01 100.0% 35.1%
4076701 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 57.0 5.48e-01 100.0% 78.0%
3254253 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.71 54.0 3.66e-01 100.0% 21.9%
1866795 2484.1.1.91 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Exu_RNase_H_like 0.70 47.0 2.96e-01 70.7% 28.4%
3787709 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 47.0 4.76e-01 70.7% 72.5%
4018431 376.1.4.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.69 52.0 4.77e-01 100.0% 61.8%
4011241 376.1.6.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain 0.69 51.0 4.70e-01 100.0% 60.0%
3619153 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.69 57.0 3.29e-01 100.0% 11.5%
3521805 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.68 55.0 4.67e-01 100.0% 61.3%
3720616 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.67 52.0 4.47e-01 100.0% 52.9%
2873240 2005.1.1.55 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1, tRNA-synt_1e, tRNA-synt_1g 0.66 55.0 3.22e-01 100.0% 11.0%
3654449 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 43.0 4.68e-01 73.2% 96.6%
3264049 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.66 53.0 4.23e-01 100.0% 44.2%
3516263 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.66 45.0 3.43e-01 75.6% 30.9%
3784601 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.65 49.0 4.80e-01 100.0% 75.6%
4937577 375.1.1.53 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Nudix_N_2 0.64 46.0 4.84e-01 100.0% 94.3%
4263170 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.64 43.0 3.73e-01 97.6% 42.9%
4990102 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 44.0 4.30e-01 73.2% 66.7%
4125041 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.63 44.0 4.61e-01 95.1% 88.6%
3892822 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.63 50.0 4.29e-01 100.0% 64.0%
3781329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 4.05e-01 100.0% 46.3%
5061790 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 44.0 4.37e-01 97.6% 71.1%
4015303 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.62 50.0 4.55e-01 100.0% 67.3%
3871804 375.1.1.256 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Pellino_RING 0.61 49.0 4.22e-01 100.0% 54.7%
3265942 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.60 42.0 2.88e-01 78.0% 19.4%
4211249 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 47.0 4.24e-01 100.0% 73.8%
5063867 109.2.1.42 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › MGH1-like_GH 0.59 42.0 2.43e-01 78.0% 16.8%
4027519 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.59 42.0 4.42e-01 100.0% 97.1%
4030297 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.59 38.0 2.47e-01 73.2% 12.9%
3621451 398.1.1.0 ↗ few secondary structure elements › Btk/CHORD zinc fingers › Btk/CHORD zinc fingers › Btk/CHORD zinc fingers 0.58 39.0 4.14e-01 80.5% 80.0%
4311400 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 38.0 3.90e-01 85.4% 72.5%
5061079 4294.1.1.13 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Zn_ribbon_TFIIB 0.57 40.0 4.01e-01 100.0% 71.1%
5058552 375.1.1.83 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.57 40.0 3.84e-01 97.6% 62.0%
5062333 375.1.1.83 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.57 39.0 3.52e-01 97.6% 47.7%
5061081 375.1.1.83 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.57 40.0 3.84e-01 100.0% 64.0%
4053431 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.56 45.0 4.15e-01 97.6% 69.1%
5020208 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 43.0 4.25e-01 100.0% 86.0%
4061485 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.55 46.0 3.07e-01 100.0% 55.4%
5026886 2498.5.1.1 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like › Cpn60_TCP1 0.54 41.0 3.43e-01 82.9% 61.4%
4962408 375.1.1.353 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF28084 0.54 40.0 4.18e-01 97.6% 97.1%
3266250 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.54 41.0 3.76e-01 100.0% 61.7%
2149195 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.53 38.0 2.61e-01 78.0% 71.0%
4124141 219.1.1.50 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.53 42.0 2.36e-01 90.2% 72.8%
317607 2004.1.1.99 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_6N 0.53 36.0 2.18e-01 75.6% 85.8%
3943640 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 40.0 3.93e-01 100.0% 82.0%
4486974 1.1.7.84 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CzcB_C 0.51 39.0 3.17e-01 90.2% 77.8%
3493703 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.51 34.0 3.33e-01 73.2% 64.4%
3929201 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.50 33.0 3.26e-01 70.7% 55.1%
1822971 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.50 39.0 2.31e-01 90.2% 11.4%
3583117 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 31.0 3.16e-01 90.2% 57.5%
4792422 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.50 39.0 2.39e-01 92.7% 14.0%