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IMGVR_UViG_3300000568_000096-3300000568-Draft_1006303631
Arc-VirIMGVR_UViG_3300000568_000096-3300000568-Draft_1006303631
Identity
- Kingdom:
- archaea
Quality
78.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-117
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02498.23 best | Bro-N | 27.4 | 5.90e-06 | 91.8% | 84.4% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b43A01 | 1.10.10.2480 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.75 | 40.0 | 5.05e-01 | 70.0% | 85.3% |
| 1l8rA00 | 3.10.260.20 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski | 0.71 | 52.0 | 5.40e-01 | 75.5% | 90.1% |
| 1sbxA00 | 3.10.260.20 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski | 0.68 | 49.0 | 5.07e-01 | 75.5% | 84.9% |
| 3l2pA01 | 1.10.3260.10 | Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain | 0.59 | 36.0 | 2.96e-01 | 90.0% | 33.8% |
| 1dq3A04 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.57 | 42.0 | 4.23e-01 | 95.5% | 75.4% |
| 3tqeA02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.57 | 37.0 | 4.34e-01 | 87.3% | 100.0% |
| 3hluA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 35.0 | 4.04e-01 | 85.5% | 95.9% |
| 2l2oA00 | 1.10.10.1540 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain | 0.53 | 33.0 | 3.63e-01 | 87.3% | 80.0% |
| 4e6xB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 44.0 | 3.31e-01 | 95.5% | 89.0% |
| 4kt5C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 35.0 | 3.88e-01 | 70.0% | 94.3% |
| 2hfvA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.51 | 35.0 | 3.97e-01 | 82.7% | 100.0% |
| 1tuzA00 | 1.10.238.110 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Diacylglycerol kinase alpha. | 0.51 | 35.0 | 3.48e-01 | 76.4% | 66.9% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3968916 | 101.1.9.63 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N | 0.85 | 71.0 | 7.26e-01 | 100.0% | 91.4% |
| 3944712 | 101.1.9.40 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › P22_AR_N | 0.77 | 63.0 | 6.45e-01 | 90.9% | 90.5% |
| 3983963 | 101.1.9.41 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N | 0.76 | 66.0 | 6.77e-01 | 91.8% | 100.0% |
| 3984393 | 101.1.9.88 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha | 0.74 | 61.0 | 6.11e-01 | 90.9% | 86.4% |
| 3947416 | 101.1.9.88 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha | 0.74 | 67.0 | 6.72e-01 | 100.0% | 96.4% |
| 4998593 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.73 | 54.0 | 5.36e-01 | 76.4% | 73.0% |
| 4954530 | 101.1.9.143 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM | 0.70 | 64.0 | 6.31e-01 | 99.1% | 100.0% |
| 3978692 | 101.1.9.143 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM | 0.67 | 61.0 | 5.51e-01 | 100.0% | 89.3% |
| 3785640 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.60 | 54.0 | 5.33e-01 | 99.1% | 99.1% |
| 4970516 | 2003.6.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like | 0.57 | 40.0 | 3.69e-01 | 90.9% | 56.4% |
| 3871099 | 3937.1.1.1 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin | 0.56 | 43.0 | 3.29e-01 | 82.7% | 80.0% |
| 3602412 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 38.0 | 3.91e-01 | 70.9% | 77.1% |
| 5024019 | 327.16.1.18 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Se_S_carrier | 0.54 | 37.0 | 4.15e-01 | 89.1% | 95.0% |
| 4938741 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.54 | 41.0 | 3.87e-01 | 81.8% | 67.9% |
| 5044477 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 32.0 | 3.31e-01 | 99.1% | 63.0% |
| 4889219 | 3937.1.1.3 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Pannexin_like | 0.53 | 46.0 | 3.31e-01 | 93.6% | 84.0% |
| 4969221 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.53 | 38.0 | 2.76e-01 | 74.5% | 27.4% |
| 3269500 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 38.0 | 3.96e-01 | 86.4% | 83.8% |
| 3632939 | 101.1.9.80 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › YOL029C_N | 0.51 | 37.0 | 3.84e-01 | 75.5% | 98.0% |
| 4029339 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.51 | 43.0 | 3.74e-01 | 93.6% | 74.9% |
| 5025457 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.51 | 31.0 | 3.21e-01 | 80.0% | 62.9% |
| 3813774 | 216.1.1.45 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › CCDC47 | 0.51 | 41.0 | 3.22e-01 | 88.2% | 53.3% |
| 4978826 | 873.1.1.18 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HTH_24 | 0.51 | 36.0 | 2.89e-01 | 72.7% | 62.1% |
| 4962051 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 36.0 | 3.40e-01 | 92.7% | 60.7% |
| 3963083 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 39.0 | 3.74e-01 | 86.4% | 73.3% |
D2
high
residues 130-168
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4yozA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.74 | 62.0 | 4.06e-01 | 100.0% | 37.2% |
| 1rr7A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 51.0 | 4.98e-01 | 79.5% | 67.4% |
| 4nb5B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 59.0 | 4.75e-01 | 100.0% | 61.2% |
| 4d7rA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.70 | 60.0 | 4.77e-01 | 100.0% | 68.3% |
| 2afrA00 | 3.40.50.10230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin biosynthesis CobH/CbiC, precorrin-8X methylmutase | 0.68 | 57.0 | 3.58e-01 | 97.4% | 18.1% |
| 3qdnA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.66 | 60.0 | 4.58e-01 | 100.0% | 47.6% |
| 8g0lB01 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 56.0 | 3.23e-01 | 100.0% | 10.8% |
| 3cjdA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 42.0 | 2.86e-01 | 92.3% | 19.8% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3278996 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 61.0 | 4.57e-01 | 89.7% | 38.0% |
| 4324528 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.74 | 52.0 | 4.29e-01 | 76.9% | 40.0% |
| 5049143 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 60.0 | 4.48e-01 | 100.0% | 45.5% |
| 3304111 | 185.1.1.3 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Hydrophob_seed | 0.69 | 58.0 | 4.76e-01 | 97.4% | 94.6% |
| 3827604 | 103.1.1.22 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › ARI1_UBAl | 0.67 | 47.0 | 3.89e-01 | 74.4% | 42.9% |
| 4938609 | 4952.1.1.1 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_1 | 0.64 | 54.0 | 3.65e-01 | 100.0% | 45.2% |
D3
high
residues 183-251
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 44.0 | 3.70e-01 | 98.6% | 43.3% |
| 2fxaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 43.0 | 3.30e-01 | 78.3% | 72.4% |
| 1kyzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 41.0 | 3.71e-01 | 98.6% | 52.4% |
| 2v79A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 42.0 | 3.55e-01 | 81.2% | 83.5% |
| 2zj2A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 46.0 | 4.33e-01 | 89.9% | 98.8% |
| 1on2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 46.0 | 4.58e-01 | 89.9% | 90.3% |
| 1c0wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 44.0 | 4.37e-01 | 89.9% | 87.7% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 45.0 | 3.55e-01 | 92.8% | 70.3% |
| 1fpqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 45.0 | 3.70e-01 | 100.0% | 62.8% |
| 1qmeA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.51 | 41.0 | 3.81e-01 | 94.2% | 80.2% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 44.0 | 3.85e-01 | 100.0% | 64.1% |
| 3go5A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 32.0 | 3.17e-01 | 98.6% | 57.0% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4957076 | 101.1.9.134 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF2067 | 0.83 | 54.0 | 5.77e-01 | 100.0% | 76.7% |
| 4928248 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 48.0 | 3.87e-01 | 72.5% | 53.1% |
| 3705622 | 2008.1.1.118 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RHSP | 0.65 | 45.0 | 2.91e-01 | 72.5% | 17.0% |
| 4968695 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.64 | 47.0 | 3.61e-01 | 78.3% | 53.1% |
| 3984393 | 101.1.9.88 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha | 0.63 | 50.0 | 4.29e-01 | 100.0% | 53.6% |
| 3919355 | 109.4.1.116 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIH_assoc | 0.59 | 43.0 | 2.73e-01 | 78.3% | 51.4% |
| 3717029 | 109.4.1.116 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIH_assoc | 0.59 | 44.0 | 2.65e-01 | 79.7% | 24.4% |
| 4970751 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 43.0 | 4.18e-01 | 76.8% | 84.0% |
| 3363114 | 325.1.7.25 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › PORR | 0.58 | 39.0 | 3.60e-01 | 71.0% | 53.3% |
| 3227661 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.57 | 44.0 | 2.81e-01 | 82.6% | 51.7% |
| 4995767 | 2004.1.1.23 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom | 0.57 | 45.0 | 3.00e-01 | 87.0% | 21.9% |
| 4973377 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.56 | 40.0 | 3.09e-01 | 89.9% | 31.2% |
| 4002747 | 109.4.1.1812 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR, RIH_assoc | 0.56 | 44.0 | 2.39e-01 | 87.0% | 14.1% |
| 3493999 | 59.1.3.0 ↗ | beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains | 0.55 | 47.0 | 4.26e-01 | 97.1% | 96.8% |
| 3620541 | 70.3.1.13 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET_TTL | 0.55 | 46.0 | 3.36e-01 | 97.1% | 75.2% |
| 3924998 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.54 | 43.0 | 2.77e-01 | 87.0% | 81.1% |
| 3779781 | 109.4.1.1812 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR, RIH_assoc | 0.54 | 44.0 | 2.46e-01 | 91.3% | 17.6% |
| 3386835 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 41.0 | 3.29e-01 | 87.0% | 90.0% |
| 4443502 | 109.4.1.116 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIH_assoc | 0.54 | 44.0 | 2.61e-01 | 91.3% | 32.6% |
| None | — | 0.53 | 45.0 | 3.63e-01 | 92.8% | 74.6% | |
| 4947701 | 101.1.2.882 ↗ | alpha arrays › HTH › HTH › winged helix domain › FeoA | 0.53 | 44.0 | 3.82e-01 | 88.4% | 72.0% |
| 3602715 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.51 | 41.0 | 3.41e-01 | 98.6% | 48.8% |
| 5010819 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 45.0 | 3.51e-01 | 100.0% | 45.3% |
| 3519143 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.51 | 40.0 | 2.75e-01 | 92.8% | 78.7% |
| 3465836 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 42.0 | 3.78e-01 | 94.2% | 75.0% |
| 4959927 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.50 | 43.0 | 3.33e-01 | 100.0% | 41.2% |
| 3320650 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.50 | 43.0 | 3.73e-01 | 91.3% | 75.0% |
| 4028937 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.50 | 36.0 | 2.11e-01 | 79.7% | 12.4% |