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IMGVR_UViG_3300000568_000328-3300000568-Draft_100043002

Arc-Vir

IMGVR_UViG_3300000568_000328-3300000568-Draft_100043002

Quality

90.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 21-87
PDB
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.70 57.0 4.65e-01 89.6% 73.4%
2lklA01 1.10.1900.40 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › Acidic terminal segments, variant surface antigen of PfEMP1 0.69 54.0 5.37e-01 88.1% 100.0%
4cc9B00 1.20.5.4730 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 52.0 4.52e-01 82.1% 68.4%
2wzfA01 1.10.1740.130 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.67 59.0 5.10e-01 98.5% 69.2%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.67 45.0 4.08e-01 70.1% 50.0%
4p17A02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.67 56.0 4.77e-01 94.0% 60.0%
2qdjA03 1.10.472.140 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.65 45.0 3.76e-01 71.6% 52.6%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.65 52.0 5.27e-01 92.5% 89.6%
3nufB00 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.65 54.0 4.65e-01 95.5% 83.9%
3sykA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.65 52.0 4.81e-01 91.0% 84.4%
3jr7A01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.65 51.0 4.24e-01 86.6% 82.2%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.65 47.0 3.77e-01 77.6% 82.8%
3uk6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 48.0 4.57e-01 92.5% 67.5%
2z4sA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 47.0 4.68e-01 94.0% 77.8%
3b40A02 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.61 36.0 3.80e-01 100.0% 65.5%
7pjdC01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 45.0 3.41e-01 80.6% 49.4%
3ubcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 43.0 3.54e-01 77.6% 82.4%
1dcnA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.59 44.0 4.38e-01 91.0% 76.4%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.59 40.0 3.99e-01 100.0% 68.1%
1sf8G00 1.20.120.790 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Heat shock protein 90, C-terminal domain 0.57 48.0 4.10e-01 100.0% 86.0%
2qguA02 1.10.10.640 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › phospholipid-binding protein 0.57 45.0 4.36e-01 89.6% 79.5%
1ym3A00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.57 44.0 3.21e-01 83.6% 68.9%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 47.0 4.46e-01 97.0% 79.8%
7tfmA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.56 48.0 3.83e-01 97.0% 47.0%
1f20A02 1.20.990.10 Mainly Alpha › Up-down Bundle › NADPH-cytochrome p450 Reductase; Chain A, domain 3 › NADPH-cytochrome p450 Reductase; Chain A, domain 3 0.56 43.0 3.35e-01 86.6% 80.5%
1qguB04 1.20.89.10 Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 0.55 37.0 3.50e-01 70.1% 60.2%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.55 43.0 4.03e-01 91.0% 69.0%
2kbwA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.55 41.0 3.24e-01 82.1% 85.0%
4hteA01 1.20.58.1730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 43.0 3.43e-01 89.6% 88.8%
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.54 45.0 4.21e-01 97.0% 74.4%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.54 42.0 3.83e-01 100.0% 61.9%
3ez0C00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 44.0 3.20e-01 92.5% 84.1%
2yi9A05 1.20.1270.270 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › VP1, C-terminal extension domain 0.54 38.0 3.68e-01 85.1% 66.2%
2oo2A00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.53 39.0 3.86e-01 86.6% 73.7%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.52 38.0 3.91e-01 83.6% 87.9%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 40.0 3.20e-01 86.6% 50.0%
2h7oA01 1.20.120.1330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Rac1-binding domain, N-terminal GTPase binding subdomain 0.51 36.0 2.97e-01 74.6% 81.3%
2kobA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.51 37.0 3.35e-01 77.6% 75.3%
2k19A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.51 41.0 3.72e-01 92.5% 77.6%
1uxtA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.50 42.0 2.89e-01 98.5% 87.5%
3vokA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 39.0 3.01e-01 88.1% 58.5%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3939983 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.79 63.0 5.08e-01 94.0% 46.4%
3239541 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.78 62.0 5.02e-01 94.0% 46.4%
5023893 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.74 59.0 4.05e-01 88.1% 25.1%
3782810 103.1.1.14 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.74 53.0 5.90e-01 85.1% 100.0%
5935 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.72 60.0 4.92e-01 94.0% 50.8%
3635697 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.71 58.0 5.24e-01 92.5% 67.4%
3258486 102.1.1.2 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC 0.69 55.0 4.78e-01 88.1% 58.1%
3655226 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.69 59.0 4.80e-01 100.0% 52.6%
4992926 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.68 55.0 5.37e-01 89.6% 82.7%
3607864 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.68 53.0 5.43e-01 86.6% 87.7%
5073064 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.68 53.0 5.41e-01 85.1% 96.9%
5049807 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.67 54.0 5.51e-01 88.1% 92.3%
3945748 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.67 53.0 4.81e-01 89.6% 97.9%
3441581 103.4.1.5 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.67 50.0 4.92e-01 79.1% 88.6%
3475061 103.1.1.3 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N 0.66 52.0 5.35e-01 89.6% 89.2%
3657981 198.1.1.16 alpha arrays › Saposin-like › Saposin-like › Saposin-like › HTH_70 0.65 45.0 4.28e-01 73.1% 62.5%
4415082 148.1.3.23 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 0.64 53.0 4.85e-01 94.0% 84.4%
5046776 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.62 50.0 5.05e-01 97.0% 92.3%
5015839 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.62 49.0 4.91e-01 94.0% 87.1%
3590548 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.61 53.0 3.69e-01 97.0% 30.7%
5023502 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 52.0 4.64e-01 98.5% 77.0%
3947132 101.1.1.109 alpha arrays › HTH › HTH › Three-helical HTH › DUF2543 0.61 48.0 4.65e-01 86.6% 81.3%
5041664 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 48.0 4.49e-01 89.6% 81.2%
3306783 7111.1.1.1 alpha bundles › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiq_cyt_C_chap 0.61 43.0 3.05e-01 74.6% 45.9%
4346064 2003.1.5.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB 0.60 50.0 3.62e-01 100.0% 91.6%
3459081 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 48.0 4.70e-01 91.0% 82.7%
4121495 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 47.0 4.57e-01 98.5% 81.3%
3989652 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.59 49.0 3.46e-01 97.0% 29.4%
4030833 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.58 47.0 3.38e-01 95.5% 31.1%
3973611 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.58 47.0 3.50e-01 98.5% 89.5%
4399710 2003.1.5.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB 0.58 49.0 3.53e-01 100.0% 94.4%
3547029 148.1.3.221 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › NPHP3_hel 0.57 44.0 4.13e-01 86.6% 76.5%
168976 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.56 47.0 3.36e-01 98.5% 31.9%
3319305 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.55 46.0 3.03e-01 94.0% 60.3%
3248344 1076.1.1.6 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › DUF2053 0.55 44.0 3.27e-01 94.0% 67.5%
3402327 3755.3.1.324 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF725 0.55 42.0 3.20e-01 85.1% 93.5%
3887909 148.1.3.5 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Pol_alpha_B_N 0.55 43.0 4.23e-01 89.6% 85.3%
5007277 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.54 40.0 3.78e-01 82.1% 76.5%
3236338 101.1.21.0 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase 0.54 44.0 3.11e-01 100.0% 49.4%
3775165 109.4.1.583 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi 0.54 44.0 2.76e-01 97.0% 24.5%
4452139 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.53 44.0 3.49e-01 95.5% 44.0%
4959131 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.53 39.0 3.82e-01 80.6% 78.7%
3978591 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.53 43.0 2.99e-01 100.0% 70.4%
4956012 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.52 39.0 3.45e-01 83.6% 65.7%
3625874 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.52 42.0 3.41e-01 91.0% 68.1%
3241203 544.1.1.0 alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 0.51 42.0 3.61e-01 97.0% 85.8%
4046684 101.1.3.3 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Spo0A_C 0.51 41.0 4.03e-01 91.0% 88.0%
3988566 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.51 38.0 3.82e-01 83.6% 78.6%
3686404 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.51 41.0 3.15e-01 91.0% 76.4%
4988269 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.51 40.0 3.57e-01 86.6% 64.2%
5027497 632.6.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit 0.51 39.0 3.75e-01 88.1% 88.7%
3862608 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.50 38.0 3.37e-01 86.6% 72.7%
4953267 632.11.1.19 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF2096_N 0.50 38.0 3.44e-01 86.6% 76.0%