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IMGVR_UViG_3300000568_000328-3300000568-Draft_100043008

Arc-Vir

IMGVR_UViG_3300000568_000328-3300000568-Draft_100043008

Quality

59.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 111-189
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3imoC00 3.30.920.70 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.68 46.0 4.14e-01 82.3% 51.4%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.67 54.0 4.38e-01 87.3% 65.3%
4v19S00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.67 55.0 4.47e-01 88.6% 81.8%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 54.0 3.76e-01 97.5% 38.1%
2yhwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 51.0 4.22e-01 87.3% 73.8%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.63 56.0 3.74e-01 98.7% 88.6%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 48.0 5.13e-01 98.7% 98.5%
1tyeA00 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.62 54.0 3.38e-01 96.2% 31.2%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 45.0 4.98e-01 83.5% 96.8%
1b9vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.62 54.0 3.44e-01 97.5% 66.9%
4ntqA00 3.10.380.20 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Novel toxin 21 (CdiA), C-terminal domain 0.61 35.0 3.59e-01 74.7% 57.9%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.60 45.0 3.70e-01 81.0% 58.4%
1inyA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 51.0 3.34e-01 97.5% 65.7%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 48.0 4.31e-01 87.3% 95.5%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 52.0 3.42e-01 97.5% 51.5%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 41.0 4.37e-01 74.7% 92.6%
1qw2A00 3.30.1980.10 Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC 0.57 45.0 4.17e-01 86.1% 92.2%
1fgsA01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.57 39.0 2.71e-01 81.0% 20.1%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.70e-01 97.5% 60.8%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.57 42.0 4.20e-01 81.0% 91.7%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 44.0 4.08e-01 82.3% 94.8%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.56 43.0 3.60e-01 86.1% 84.2%
1ei5A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 45.0 3.08e-01 91.1% 84.7%
2g30A01 2.60.40.1150 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 48.0 4.32e-01 100.0% 94.9%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.56 41.0 3.87e-01 79.7% 86.9%
5ctnA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 45.0 3.29e-01 92.4% 82.0%
1a8dA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 3.32e-01 94.9% 49.2%
2zgoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 3.79e-01 100.0% 67.1%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 47.0 3.08e-01 97.5% 41.6%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.52 47.0 4.29e-01 100.0% 86.5%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 46.0 3.06e-01 98.7% 92.4%
6fdmA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 41.0 3.73e-01 88.6% 75.5%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 43.0 3.80e-01 100.0% 63.2%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 39.0 2.81e-01 83.5% 32.8%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 3.06e-01 98.7% 90.8%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 43.0 3.77e-01 100.0% 70.4%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.52 35.0 3.46e-01 92.4% 64.8%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 3.70e-01 98.7% 93.3%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 43.0 3.86e-01 97.5% 83.5%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5079230 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.75 61.0 5.55e-01 87.3% 74.3%
2756654 2484.1.1.11 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p 0.68 55.0 4.53e-01 88.6% 81.2%
3216253 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.67 52.0 4.44e-01 83.5% 80.0%
3223718 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.67 52.0 4.40e-01 83.5% 78.5%
3221683 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.67 52.0 4.40e-01 83.5% 80.8%
3225961 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.66 51.0 4.38e-01 83.5% 82.3%
3217795 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.66 51.0 4.40e-01 83.5% 82.4%
3813951 241.15.1.2 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.66 52.0 4.23e-01 87.3% 54.8%
3211509 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.65 50.0 4.29e-01 83.5% 78.5%
4124524 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.65 56.0 4.20e-01 97.5% 63.4%
3242741 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 44.0 3.06e-01 98.7% 20.9%
3709589 11.10.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.65 50.0 3.87e-01 83.5% 60.0%
3223735 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.64 50.0 4.36e-01 83.5% 84.2%
3592859 11.10.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.64 50.0 3.96e-01 83.5% 65.6%
3228027 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.64 49.0 4.27e-01 83.5% 84.8%
3929256 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.64 56.0 4.71e-01 100.0% 89.3%
4031638 7089.1.1.1 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF1108 0.64 54.0 5.29e-01 93.7% 92.9%
3796352 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.64 48.0 5.24e-01 81.0% 100.0%
4978676 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.64 46.0 4.67e-01 77.2% 83.7%
3814053 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.63 48.0 4.11e-01 83.5% 84.4%
3238362 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 56.0 3.72e-01 97.5% 45.5%
3803814 11.10.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.63 48.0 3.76e-01 83.5% 61.7%
4022704 5.1.5.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.61 53.0 3.41e-01 94.9% 30.9%
3591269 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.61 54.0 3.59e-01 97.5% 63.7%
5013467 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 53.0 3.53e-01 97.5% 43.9%
5037626 5.1.10.18 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › FG-GAP_3 0.60 47.0 4.66e-01 100.0% 78.8%
3794738 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.60 51.0 3.90e-01 97.5% 61.0%
3735753 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 51.0 2.91e-01 96.2% 13.4%
3597369 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.59 51.0 3.11e-01 93.7% 30.4%
3444588 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 50.0 3.30e-01 97.5% 77.8%
3394516 241.15.1.2 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.59 46.0 3.84e-01 86.1% 54.9%
3706874 5.1.3.243 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_WDR35_2nd 0.59 51.0 3.42e-01 97.5% 52.1%
4471281 10.1.1.89 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF26321 0.59 50.0 3.65e-01 97.5% 46.4%
3485288 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.58 51.0 3.81e-01 97.5% 68.0%
3698121 5.1.4.52 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sortilin-Vps10 0.58 50.0 2.81e-01 96.2% 12.1%
5057625 5.1.4.43 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.58 50.0 3.15e-01 96.2% 29.9%
3277064 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 43.0 3.43e-01 86.1% 37.1%
3929846 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 51.0 3.39e-01 97.5% 55.2%
5079458 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 50.0 3.22e-01 97.5% 30.0%
3340222 3131.1.1.3 a+b two layers › FYR domain › FYR domain › FYR domain › FYRC 0.57 48.0 4.18e-01 100.0% 60.0%
4486641 5.1.7.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.57 50.0 2.80e-01 100.0% 33.8%
3613178 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.57 51.0 4.28e-01 100.0% 74.8%
5047088 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.57 51.0 3.69e-01 100.0% 47.3%
3937294 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.56 46.0 3.56e-01 100.0% 39.4%
3882269 220.1.1.25 beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.56 50.0 4.57e-01 100.0% 88.6%
3486202 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 49.0 3.05e-01 96.2% 29.2%
4002544 5.1.4.298 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.56 48.0 2.93e-01 97.5% 48.3%
5046458 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.55 48.0 3.77e-01 100.0% 73.7%
5056195 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 46.0 3.11e-01 97.5% 39.7%
4419937 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.54 37.0 3.66e-01 83.5% 65.9%
3510850 3459.1.1.0 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.54 46.0 4.42e-01 96.2% 97.8%
5052460 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 47.0 3.02e-01 96.2% 32.1%
3626264 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 44.0 3.11e-01 97.5% 46.2%
5013654 5.1.5.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.53 46.0 3.07e-01 97.5% 38.5%
3857670 633.23.1.35 alpha bundles › Bromodomain-like › Claudin › Claudin › Clarin-2 0.53 45.0 3.43e-01 100.0% 66.0%
3932045 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.53 43.0 3.29e-01 87.3% 55.0%
3482713 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 47.0 3.95e-01 100.0% 74.8%
4937970 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.53 40.0 3.53e-01 78.5% 67.3%
3592054 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 46.0 3.34e-01 100.0% 70.6%
5010198 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.52 46.0 3.99e-01 100.0% 91.2%
4952360 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.52 44.0 2.81e-01 97.5% 78.2%
3602148 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.97e-01 91.1% 88.0%
3215691 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.52 45.0 3.09e-01 100.0% 30.8%
4998236 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.51 43.0 2.71e-01 93.7% 71.4%
3556710 9.1.1.24 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.50 43.0 3.76e-01 100.0% 94.5%
D2 medium residues 221-254
PDB
Domain cluster: representative