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IMGVR_UViG_3300000574_000018-3300000574-JGI1357J11328_1000159411
Arc-VirIMGVR_UViG_3300000574_000018-3300000574-JGI1357J11328_1000159411
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-177
Domain cluster:
rep: MT764210__UXF49854.1__7841G1D8-26__00026__D257-398
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6toaF01 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.85 | 70.0 | 7.47e-01 | 99.3% | 96.9% |
| 3fz2A00 | 3.30.70.1700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U | 0.83 | 67.0 | 7.13e-01 | 100.0% | 95.3% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.83 | 68.0 | 7.13e-01 | 100.0% | 91.9% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.75 | 28.0 | 3.26e-01 | 98.0% | 46.8% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.73 | 47.0 | 5.58e-01 | 100.0% | 94.9% |
| 2l25A00 | 3.30.2000.20 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.73 | 62.0 | 6.40e-01 | 100.0% | 93.6% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.72 | 68.0 | 5.92e-01 | 100.0% | 78.6% |
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.71 | 43.0 | 4.80e-01 | 91.8% | 76.3% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.71 | 32.0 | 3.26e-01 | 98.0% | 42.6% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.71 | 43.0 | 4.80e-01 | 91.8% | 76.5% |
| 4pxeA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 43.0 | 4.80e-01 | 91.8% | 76.9% |
| 3pcoB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.67 | 36.0 | 4.39e-01 | 83.0% | 80.9% |
| 6vh5C03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.66 | 34.0 | 4.23e-01 | 92.5% | 79.8% |
| 3k8aB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 26.0 | 3.09e-01 | 95.9% | 50.5% |
| 3w7bA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.65 | 34.0 | 4.20e-01 | 87.1% | 81.8% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.64 | 36.0 | 4.38e-01 | 85.7% | 85.1% |
| 2je8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 35.0 | 3.95e-01 | 89.8% | 70.0% |
| 1y7pB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 32.0 | 4.07e-01 | 85.0% | 85.0% |
| 3ahpA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 38.0 | 4.36e-01 | 93.2% | 83.0% |
| 3w1eA02 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.62 | 43.0 | 4.05e-01 | 100.0% | 58.8% |
| 1vmbA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.61 | 36.0 | 4.11e-01 | 90.5% | 79.4% |
| 3eniC00 | 2.50.10.10 | Mainly Beta › Clam › Bacteriochlorophyll-a Protein › Bacteriochlorophyll A | 0.61 | 50.0 | 3.77e-01 | 87.8% | 44.7% |
| 3lvtA03 | 2.60.40.2210 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 35.0 | 3.76e-01 | 93.9% | 70.5% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.56 | 34.0 | 4.22e-01 | 99.3% | 98.9% |
| 5aj3E01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.56 | 27.0 | 3.43e-01 | 99.3% | 77.8% |
| 2x1wL02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 38.0 | 4.46e-01 | 89.1% | 99.0% |
| 3nrfA00 | 2.60.40.4110 | Mainly Beta › Sandwich › Immunoglobulin-like › Protein of unknown function DUF4354 | 0.55 | 33.0 | 3.85e-01 | 89.8% | 85.3% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.54 | 32.0 | 3.98e-01 | 98.6% | 97.7% |
| 3qkbA00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.54 | 34.0 | 4.11e-01 | 94.6% | 97.9% |
| 2e9wB05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 33.0 | 4.09e-01 | 73.5% | 100.0% |
| 1aq3A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.52 | 33.0 | 3.52e-01 | 98.6% | 71.3% |
| 4afhE00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.52 | 48.0 | 4.23e-01 | 100.0% | 73.1% |
| 2bj0A00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.52 | 48.0 | 4.29e-01 | 100.0% | 82.8% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.51 | 33.0 | 3.17e-01 | 99.3% | 56.0% |
| 4c98A02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 36.0 | 3.70e-01 | 82.3% | 77.4% |
| 3byqA00 | 3.30.1330.110 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 | 0.51 | 42.0 | 3.86e-01 | 87.8% | 88.0% |
| 2w8eA00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.50 | 46.0 | 4.12e-01 | 99.3% | 81.8% |
| 5tseA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.50 | 29.0 | 3.07e-01 | 81.0% | 58.8% |
| 1jj2L00 | 3.40.1120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal protein L15e › Ribosomal protein L15 | 0.50 | 37.0 | 3.35e-01 | 81.6% | 56.7% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4957584 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.91 | 68.0 | 7.70e-01 | 99.3% | 96.5% |
| 5040945 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.88 | 79.0 | 7.92e-01 | 100.0% | 92.0% |
| 5454 | 304.124.1.2 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 | 0.83 | 68.0 | 7.18e-01 | 100.0% | 93.3% |
| 4928893 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.82 | 74.0 | 7.51e-01 | 100.0% | 95.2% |
| 364035 | 304.124.1.1 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_U | 0.80 | 66.0 | 6.92e-01 | 100.0% | 94.7% |
| 5083619 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.80 | 70.0 | 7.17e-01 | 100.0% | 95.1% |
| 4261744 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.80 | 64.0 | 6.90e-01 | 99.3% | 97.6% |
| 3964886 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.79 | 69.0 | 7.08e-01 | 98.0% | 96.4% |
| 4291659 | 304.124.1.8 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_Mu_Gp37 | 0.76 | 66.0 | 6.82e-01 | 99.3% | 95.0% |
| 140398 | 304.124.1.4 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF4128 | 0.73 | 62.0 | 6.40e-01 | 100.0% | 93.6% |
| 3589403 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.73 | 55.0 | 6.06e-01 | 97.3% | 95.8% |
| 4380022 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.71 | 43.0 | 4.79e-01 | 91.8% | 76.5% |
| 3684969 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.70 | 42.0 | 4.67e-01 | 91.8% | 74.8% |
| 4088643 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.70 | 41.0 | 4.77e-01 | 83.0% | 81.0% |
| 3606930 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.68 | 48.0 | 5.44e-01 | 100.0% | 97.2% |
| 3720487 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.68 | 42.0 | 4.59e-01 | 91.2% | 74.2% |
| 3943477 | 310.3.1.9 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › P2_Phage_GpR | 0.68 | 50.0 | 5.35e-01 | 100.0% | 86.9% |
| 3623538 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.65 | 45.0 | 4.24e-01 | 100.0% | 57.8% |
| 4938900 | 11.1.1.1424 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 | 0.65 | 37.0 | 3.85e-01 | 89.8% | 59.3% |
| 3776086 | 306.10.1.5 ↗ | a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 › PF31088 | 0.65 | 39.0 | 4.16e-01 | 100.0% | 66.9% |
| 2167751 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.64 | 39.0 | 4.24e-01 | 91.8% | 73.1% |
| 3442957 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 40.0 | 4.11e-01 | 89.1% | 65.7% |
| 3170424 | 319.1.1.19 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29696 | 0.63 | 39.0 | 4.87e-01 | 84.4% | 100.0% |
| 4941514 | 11.1.5.59 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 | 0.63 | 40.0 | 4.93e-01 | 88.4% | 100.0% |
| 4940026 | 4081.1.1.17 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF7345 | 0.61 | 43.0 | 4.08e-01 | 75.5% | 60.6% |
| 4140824 | 304.4.1.3 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII | 0.58 | 35.0 | 4.01e-01 | 89.8% | 82.7% |
| 4059301 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.58 | 41.0 | 4.67e-01 | 98.6% | 99.1% |
| 5044328 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.57 | 46.0 | 3.92e-01 | 95.9% | 53.9% |
| 3202394 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 34.0 | 3.46e-01 | 84.4% | 59.3% |
| 3969233 | 11.1.5.59 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 | 0.56 | 43.0 | 4.64e-01 | 98.0% | 94.4% |
| 5044753 | 11.1.5.59 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 | 0.55 | 45.0 | 4.76e-01 | 98.0% | 96.2% |
| 4944707 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.55 | 44.0 | 4.57e-01 | 97.3% | 89.9% |
| 3605491 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.54 | 32.0 | 3.56e-01 | 100.0% | 72.5% |
| 3708605 | 11.1.5.59 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 | 0.54 | 41.0 | 4.40e-01 | 89.1% | 92.8% |
| 3819973 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.53 | 36.0 | 3.52e-01 | 90.5% | 61.2% |
| 3823986 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 36.0 | 3.54e-01 | 90.5% | 61.8% |
| 5047935 | 12.1.1.94 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF4139 | 0.53 | 44.0 | 4.45e-01 | 97.3% | 89.7% |
| 3643822 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 34.0 | 3.34e-01 | 73.5% | 59.4% |
| 150358 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.52 | 47.0 | 4.20e-01 | 100.0% | 72.6% |
| 3934435 | 4081.1.1.13 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF4139 | 0.52 | 43.0 | 4.39e-01 | 98.0% | 91.4% |
| 3449994 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 39.0 | 3.63e-01 | 89.8% | 63.3% |
| 3598105 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.51 | 40.0 | 4.40e-01 | 89.1% | 99.2% |
| 3893032 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.51 | 36.0 | 3.81e-01 | 94.6% | 81.5% |
| 3944238 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.51 | 44.0 | 3.54e-01 | 93.2% | 95.1% |
| 3214584 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.50 | 46.0 | 3.93e-01 | 100.0% | 71.1% |
| 1918550 | 7503.1.1.4 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE | 0.50 | 29.0 | 3.07e-01 | 81.0% | 58.8% |
| 3218051 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.50 | 45.0 | 4.05e-01 | 99.3% | 81.9% |
| 3280982 | 222.1.1.11 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › DUF4442 | 0.50 | 37.0 | 3.71e-01 | 98.6% | 74.7% |