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IMGVR_UViG_3300000574_000096-3300000574-JGI1357J11328_100106663
Arc-VirIMGVR_UViG_3300000574_000096-3300000574-JGI1357J11328_100106663
Identity
- Kingdom:
- archaea
Quality
52.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-97
D2
high
residues 103-162
Domain cluster:
rep: BML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00242__D111-172
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.83 | 74.0 | 6.24e-01 | 100.0% | 61.1% |
| 1uz5A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.73 | 65.0 | 6.14e-01 | 100.0% | 93.1% |
| 8bveA03 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.72 | 63.0 | 5.96e-01 | 98.3% | 100.0% |
| 1wu2A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.70 | 61.0 | 5.67e-01 | 100.0% | 90.9% |
| 3gqhA01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.68 | 62.0 | 4.84e-01 | 100.0% | 55.3% |
| 1nrkA03 | 2.40.30.160 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.66 | 51.0 | 4.01e-01 | 100.0% | 41.0% |
| 3tvzB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 42.0 | 3.26e-01 | 71.7% | 77.4% |
| 1wosA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.58 | 44.0 | 3.94e-01 | 100.0% | 58.1% |
| 1ileA02 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.57 | 43.0 | 3.17e-01 | 86.7% | 38.5% |
| 3p26A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 47.0 | 3.89e-01 | 100.0% | 61.8% |
| 1f60A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 47.0 | 3.92e-01 | 100.0% | 63.9% |
| 4l82A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 43.0 | 3.34e-01 | 98.3% | 60.3% |
| 1rgwA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.51 | 43.0 | 3.95e-01 | 100.0% | 96.5% |
| 1vloA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.51 | 40.0 | 3.59e-01 | 100.0% | 59.3% |
| 8eq1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.50 | 42.0 | 3.80e-01 | 100.0% | 70.5% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4937267 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.95 | 89.0 | 6.80e-01 | 98.3% | 49.2% |
| 5033307 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.95 | 89.0 | 6.53e-01 | 100.0% | 43.6% |
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.91 | 75.0 | 7.56e-01 | 100.0% | 88.1% |
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.86 | 76.0 | 7.73e-01 | 98.3% | 96.6% |
| 2808420 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.82 | 72.0 | 5.84e-01 | 100.0% | 53.2% |
| 5083817 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.81 | 73.0 | 7.15e-01 | 98.3% | 100.0% |
| 3981037 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.80 | 67.0 | 7.03e-01 | 100.0% | 100.0% |
| 5002644 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.80 | 71.0 | 6.58e-01 | 98.3% | 94.7% |
| 2640772 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.77 | 71.0 | 5.88e-01 | 100.0% | 60.0% |
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.77 | 70.0 | 6.62e-01 | 100.0% | 92.9% |
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.75 | 66.0 | 6.65e-01 | 100.0% | 96.7% |
| 3945811 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.74 | 64.0 | 6.43e-01 | 96.7% | 95.0% |
| 3603211 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.73 | 65.0 | 5.89e-01 | 100.0% | 90.0% |
| 5039270 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.73 | 58.0 | 6.04e-01 | 96.7% | 94.5% |
| 4963571 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.73 | 58.0 | 5.76e-01 | 100.0% | 84.6% |
| 5025019 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.73 | 64.0 | 5.77e-01 | 100.0% | 88.1% |
| 4953517 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.72 | 65.0 | 6.06e-01 | 100.0% | 93.2% |
| 5016125 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.72 | 58.0 | 6.00e-01 | 100.0% | 100.0% |
| 4975116 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.72 | 64.0 | 5.80e-01 | 100.0% | 91.3% |
| 5022524 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.72 | 58.0 | 5.57e-01 | 100.0% | 78.6% |
| 3205316 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.72 | 64.0 | 5.59e-01 | 100.0% | 93.3% |
| 4930449 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.71 | 61.0 | 5.73e-01 | 96.7% | 94.7% |
| 3516152 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.71 | 63.0 | 5.64e-01 | 100.0% | 92.9% |
| 3227803 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.71 | 63.0 | 6.14e-01 | 98.3% | 100.0% |
| 5083172 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.71 | 57.0 | 6.02e-01 | 91.7% | 100.0% |
| 4991571 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.71 | 62.0 | 5.70e-01 | 100.0% | 92.5% |
| 5012061 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.71 | 61.0 | 5.84e-01 | 96.7% | 95.7% |
| 4617493 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.70 | 63.0 | 5.72e-01 | 100.0% | 92.5% |
| 4935036 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.70 | 61.0 | 5.81e-01 | 100.0% | 94.5% |
| 2526359 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.69 | 58.0 | 5.83e-01 | 100.0% | 95.0% |
| 4950136 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.69 | 60.0 | 5.57e-01 | 96.7% | 94.7% |
| 4982596 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.69 | 59.0 | 5.67e-01 | 98.3% | 98.6% |
| 5011090 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.69 | 59.0 | 5.49e-01 | 96.7% | 93.3% |
| 4409090 | 1.1.8.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel | 0.68 | 53.0 | 4.92e-01 | 100.0% | 66.7% |
| 3970319 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.67 | 50.0 | 4.35e-01 | 100.0% | 53.3% |
| 2984229 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.67 | 57.0 | 5.28e-01 | 100.0% | 93.6% |
| 5016905 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.63 | 52.0 | 5.10e-01 | 98.3% | 97.1% |
| 4943196 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.62 | 46.0 | 4.14e-01 | 100.0% | 57.6% |
| 4190434 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.60 | 46.0 | 3.24e-01 | 86.7% | 36.7% |
| 224012 | 3077.1.1.3 ↗ | beta sandwiches › Heme-binding protein HmuY-related › Heme-binding protein HmuY-related › Heme-binding protein HmuY-related › PF29636 | 0.59 | 45.0 | 3.34e-01 | 83.3% | 95.7% |
| 3236827 | 1.1.8.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C | 0.58 | 50.0 | 3.98e-01 | 100.0% | 49.6% |
| 159 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.57 | 44.0 | 3.92e-01 | 100.0% | 57.8% |
| 4025090 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.55 | 44.0 | 2.88e-01 | 91.7% | 50.9% |
| 3388436 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.54 | 44.0 | 4.16e-01 | 90.0% | 76.7% |
| 4173804 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 37.0 | 3.37e-01 | 100.0% | 52.2% |
| 4946420 | 376.1.1.180 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ResIII | 0.50 | 39.0 | 3.83e-01 | 86.7% | 98.5% |