Back to structures

IMGVR_UViG_3300000873_000002-3300000873-JGI12451J12833_100005842

Arc-Vir

IMGVR_UViG_3300000873_000002-3300000873-JGI12451J12833_100005842

Quality

82.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-58
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o54A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 42.0 3.10e-01 89.7% 80.3%
3iibA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 44.0 2.83e-01 91.4% 46.2%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.54 42.0 3.03e-01 86.2% 97.7%
2uv8A04 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 38.0 2.24e-01 75.9% 72.7%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.52 36.0 3.15e-01 72.4% 48.3%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3244416 7516.1.1.69 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_92 0.65 43.0 2.66e-01 74.1% 11.3%
3866305 385.1.1.8 few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › DAN 0.54 38.0 3.32e-01 74.1% 53.2%
3472406 5.1.12.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.54 40.0 2.54e-01 94.8% 15.3%
3585959 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.53 42.0 2.83e-01 93.1% 83.6%
4198 4970.1.1.3 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B_2 0.51 37.0 3.65e-01 84.5% 75.4%
5055840 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.51 37.0 3.11e-01 82.8% 77.2%
57748 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.50 36.0 3.58e-01 84.5% 73.8%
D2 medium residues 59-128
PDB
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.75 51.0 4.78e-01 80.0% 57.5%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 56.0 4.25e-01 84.3% 59.2%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 54.0 4.13e-01 84.3% 58.7%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.67 44.0 4.30e-01 81.4% 60.8%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.65 50.0 4.27e-01 82.9% 65.5%
6vbkA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.64 47.0 4.16e-01 81.4% 68.5%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.64 49.0 4.39e-01 82.9% 64.0%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.64 49.0 4.24e-01 82.9% 66.1%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 48.0 4.06e-01 82.9% 68.9%
3mcaB01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.62 40.0 3.60e-01 71.4% 47.9%
3szeA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 47.0 3.14e-01 87.1% 56.8%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.60 51.0 4.27e-01 97.1% 81.6%
2p04A00 3.30.450.260 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain 0.60 52.0 4.57e-01 98.6% 92.5%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.59 45.0 4.17e-01 100.0% 64.1%
2gefA01 2.30.42.30 Mainly Beta › Roll › Pdz3 Domain › 0.58 45.0 3.88e-01 84.3% 85.7%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.58 52.0 4.39e-01 100.0% 78.6%
4gj4D00 3.30.450.260 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain 0.57 49.0 4.19e-01 98.6% 90.6%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.57 51.0 4.24e-01 100.0% 73.8%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 41.0 3.92e-01 87.1% 66.3%
1tolA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.56 38.0 3.69e-01 81.4% 61.0%
1yuaA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 29.0 3.11e-01 88.6% 60.3%
3c8cB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 42.0 3.50e-01 88.6% 84.3%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.52 40.0 3.66e-01 88.6% 71.2%
3lifA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 45.0 4.17e-01 100.0% 94.4%
3bwlB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 45.0 3.82e-01 100.0% 87.8%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.50e-01 90.0% 89.3%
3by9B01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 42.0 3.54e-01 95.7% 89.3%
2zzeA03 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 43.0 3.91e-01 95.7% 85.7%
1kyfA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.51 41.0 3.53e-01 90.0% 84.1%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.51 42.0 3.48e-01 98.6% 93.7%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 38.0 3.39e-01 81.4% 84.0%
3oloA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 42.0 3.73e-01 98.6% 93.7%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4446394 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.72 55.0 3.73e-01 82.9% 29.2%
3501754 1.1.13.19 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N 0.72 52.0 4.47e-01 80.0% 50.5%
3237442 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 56.0 4.91e-01 82.9% 58.0%
4983682 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.72 56.0 4.37e-01 82.9% 67.1%
4637249 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.71 54.0 3.78e-01 81.4% 33.6%
3972102 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 55.0 4.83e-01 82.9% 58.0%
4655335 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.70 54.0 3.71e-01 81.4% 36.4%
4933308 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.70 55.0 4.16e-01 82.9% 58.1%
5071089 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 43.0 5.01e-01 80.0% 88.0%
1883205 1.1.13.19 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N 0.69 50.0 4.26e-01 81.4% 48.2%
4610038 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.69 52.0 3.59e-01 81.4% 29.8%
4313132 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.68 52.0 3.54e-01 82.9% 30.4%
4358643 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.68 51.0 3.61e-01 81.4% 33.6%
4245054 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.68 51.0 3.54e-01 81.4% 29.2%
4170287 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.67 51.0 3.65e-01 82.9% 33.0%
2755063 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.67 51.0 3.66e-01 82.9% 34.4%
3946118 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 57.0 5.65e-01 100.0% 89.3%
4382946 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.66 49.0 3.53e-01 81.4% 33.0%
3956124 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.66 49.0 3.54e-01 81.4% 33.8%
4098005 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 50.0 4.66e-01 98.6% 64.4%
4586641 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.66 50.0 3.47e-01 82.9% 30.0%
189 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.65 50.0 3.62e-01 82.9% 37.6%
4458331 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.65 49.0 3.44e-01 82.9% 31.1%
4509138 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.65 49.0 3.50e-01 82.9% 32.7%
4588052 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.64 49.0 3.38e-01 82.9% 29.6%
4098347 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 49.0 2.97e-01 82.9% 15.3%
4553723 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 47.0 4.29e-01 98.6% 57.9%
4648999 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.64 49.0 3.46e-01 82.9% 33.2%
4171744 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.64 48.0 3.40e-01 82.9% 31.5%
3820214 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.64 48.0 3.40e-01 81.4% 30.2%
4081025 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.64 54.0 3.73e-01 100.0% 44.5%
4531216 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.64 48.0 3.36e-01 82.9% 30.4%
4169706 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.63 48.0 3.36e-01 82.9% 30.1%
3492373 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.63 48.0 4.07e-01 82.9% 94.8%
3407835 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 46.0 3.09e-01 80.0% 21.2%
3868227 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 44.0 4.04e-01 81.4% 55.8%
1320672 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.62 53.0 3.64e-01 100.0% 41.4%
4519471 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.61 46.0 4.40e-01 81.4% 77.4%
3473588 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 46.0 4.18e-01 82.9% 60.0%
3838132 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.59 46.0 4.33e-01 82.9% 77.4%
4033230 2008.1.1.155 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc 0.59 41.0 3.35e-01 78.6% 35.9%
331286 223.1.1.11 a+b three layers › Profilin-like › sensor domains › sensor domains › HNOBA 0.59 51.0 4.45e-01 98.6% 88.2%
4605381 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.59 45.0 4.26e-01 82.9% 77.4%
4209527 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.59 49.0 4.22e-01 100.0% 58.2%
4542561 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.58 49.0 4.19e-01 100.0% 58.2%
3487595 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.58 43.0 3.62e-01 82.9% 54.6%
4152219 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.58 50.0 4.08e-01 92.9% 82.4%
4552342 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.58 48.0 4.09e-01 100.0% 57.3%
3164706 223.1.1.58 a+b three layers › Profilin-like › sensor domains › sensor domains › 2CSK_N 0.58 45.0 3.81e-01 87.1% 84.0%
3939314 223.1.1.11 a+b three layers › Profilin-like › sensor domains › sensor domains › HNOBA 0.58 50.0 3.89e-01 98.6% 70.0%
4796695 223.1.1.11 a+b three layers › Profilin-like › sensor domains › sensor domains › HNOBA 0.58 50.0 4.40e-01 98.6% 92.6%
4244186 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.58 49.0 4.14e-01 92.9% 87.0%
4475003 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.58 43.0 3.00e-01 82.9% 34.6%
4280632 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.57 48.0 4.13e-01 100.0% 58.2%
4174934 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.57 42.0 4.06e-01 81.4% 79.5%
3242256 223.1.1.11 a+b three layers › Profilin-like › sensor domains › sensor domains › HNOBA 0.57 50.0 3.75e-01 100.0% 73.3%
5043521 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.57 43.0 3.57e-01 82.9% 87.4%
4496370 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.57 48.0 3.92e-01 100.0% 51.2%
4433958 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.56 42.0 4.03e-01 82.9% 76.5%
4109849 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.56 42.0 4.03e-01 82.9% 77.6%
4159958 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.56 49.0 4.22e-01 97.1% 87.3%
5014541 5090.1.1.11 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S_layer_N 0.56 42.0 3.57e-01 81.4% 71.7%
4638448 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.55 50.0 4.32e-01 98.6% 86.7%
4402448 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.55 50.0 4.15e-01 100.0% 61.7%
4529321 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.55 49.0 4.13e-01 98.6% 83.5%
4300660 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.55 47.0 3.94e-01 94.3% 84.2%
4886283 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.54 39.0 2.79e-01 78.6% 47.7%
3217512 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 47.0 3.80e-01 100.0% 84.3%
4039213 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.54 39.0 3.85e-01 81.4% 80.0%
5021539 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 40.0 2.62e-01 84.3% 17.3%
3252482 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.50 38.0 3.55e-01 100.0% 63.2%
1772309 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.50 39.0 3.15e-01 84.3% 69.1%