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IMGVR_UViG_3300000885_000002-3300000885-JGI12445J12830_10004049
Arc-VirIMGVR_UViG_3300000885_000002-3300000885-JGI12445J12830_10004049
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-28_44-123
Domain cluster:
rep: IMGVR_UViG_2791355071_000002-2791355071-2792538491__D3-122
CATH (62)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vxaA00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.66 | 39.0 | 4.73e-01 | 73.3% | 93.9% |
| 6vh5C03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.64 | 37.0 | 4.05e-01 | 74.3% | 68.5% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 37.0 | 4.00e-01 | 73.3% | 67.8% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.63 | 37.0 | 4.56e-01 | 73.3% | 96.9% |
| 1b7yB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.62 | 37.0 | 4.02e-01 | 74.3% | 70.9% |
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 35.0 | 4.07e-01 | 81.9% | 78.4% |
| 4o38A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 45.0 | 4.70e-01 | 92.4% | 83.3% |
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 36.0 | 3.92e-01 | 73.3% | 68.5% |
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.62 | 56.0 | 4.82e-01 | 100.0% | 77.8% |
| 3pcoB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.61 | 36.0 | 3.85e-01 | 74.3% | 64.9% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.61 | 41.0 | 4.21e-01 | 95.2% | 70.2% |
| 4f0qD01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.61 | 55.0 | 4.14e-01 | 100.0% | 58.0% |
| 3he1A00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.61 | 55.0 | 4.93e-01 | 100.0% | 84.4% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.61 | 38.0 | 3.76e-01 | 73.3% | 58.9% |
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.60 | 55.0 | 4.75e-01 | 100.0% | 79.4% |
| 4divV01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.60 | 53.0 | 4.89e-01 | 100.0% | 91.2% |
| 3fbqA02 | 2.60.40.1640 | Mainly Beta › Sandwich › Immunoglobulin-like › Conserved domain protein. | 0.60 | 44.0 | 3.97e-01 | 93.3% | 57.6% |
| 3ct9A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 42.0 | 4.23e-01 | 73.3% | 77.6% |
| 3tvjB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 44.0 | 4.46e-01 | 100.0% | 77.6% |
| 2fbjH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 38.0 | 4.34e-01 | 91.4% | 93.2% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.59 | 47.0 | 4.44e-01 | 100.0% | 71.8% |
| 3hz7A00 | 3.30.110.40 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain | 0.59 | 39.0 | 4.55e-01 | 97.1% | 95.9% |
| 5lhrA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 47.0 | 4.55e-01 | 100.0% | 76.9% |
| 2f7vA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 41.0 | 4.14e-01 | 72.4% | 75.0% |
| 2aiqA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 43.0 | 4.20e-01 | 100.0% | 70.8% |
| 3tx8A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 41.0 | 4.02e-01 | 72.4% | 74.6% |
| 1p57B02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 43.0 | 4.22e-01 | 100.0% | 70.3% |
| 1j27A00 | 3.30.70.1120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TT1725-like | 0.58 | 38.0 | 3.91e-01 | 75.2% | 70.4% |
| 5uejA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 41.0 | 4.01e-01 | 73.3% | 75.4% |
| 4j37A02 | 3.30.70.660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain | 0.58 | 41.0 | 3.37e-01 | 72.4% | 49.5% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.58 | 52.0 | 4.17e-01 | 100.0% | 83.3% |
| 7x7zA01 | 2.40.480.10 | Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like | 0.58 | 40.0 | 3.69e-01 | 72.4% | 100.0% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.58 | 45.0 | 4.62e-01 | 99.0% | 88.9% |
| 2rrnA01 | 3.30.70.2040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 35.0 | 3.83e-01 | 86.7% | 75.9% |
| 1vs3A02 | 3.30.70.660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain | 0.57 | 41.0 | 3.70e-01 | 74.3% | 61.8% |
| 1k8wA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.57 | 47.0 | 3.62e-01 | 89.5% | 53.9% |
| 6ruiB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.57 | 45.0 | 4.29e-01 | 85.7% | 93.7% |
| 1lp9E02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 35.0 | 3.86e-01 | 90.5% | 80.0% |
| 3rtyB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 40.0 | 3.98e-01 | 73.3% | 100.0% |
| 1el6A02 | 2.20.20.20 | Mainly Beta › Single Sheet › Anthopleurin-A › Baseplate structural protein gp11, C-terminal domain | 0.56 | 27.0 | 3.57e-01 | 70.5% | 95.7% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 36.0 | 3.78e-01 | 74.3% | 70.8% |
| 2rhqB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.56 | 34.0 | 3.80e-01 | 71.4% | 77.1% |
| 2c5dC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 40.0 | 4.04e-01 | 91.4% | 75.0% |
| 3a27A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 44.0 | 3.49e-01 | 85.7% | 67.6% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.55 | 39.0 | 3.07e-01 | 72.4% | 75.5% |
| 2wngA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 39.0 | 3.90e-01 | 93.3% | 72.0% |
| 1jssA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 45.0 | 3.72e-01 | 91.4% | 72.4% |
| 8ediA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 37.0 | 3.73e-01 | 92.4% | 69.2% |
| 3e3pA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 36.0 | 4.03e-01 | 86.7% | 89.7% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.55 | 45.0 | 4.40e-01 | 100.0% | 84.1% |
| 2wiqA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.55 | 47.0 | 3.65e-01 | 93.3% | 92.0% |
| 3gwmA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.54 | 38.0 | 3.53e-01 | 72.4% | 99.2% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 35.0 | 3.57e-01 | 73.3% | 67.3% |
| 2c9kA03 | 2.100.10.10 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain | 0.53 | 38.0 | 3.11e-01 | 74.3% | 100.0% |
| 4m4xA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 42.0 | 3.97e-01 | 85.7% | 100.0% |
| 8ab6B02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.52 | 43.0 | 3.66e-01 | 92.4% | 82.7% |
| 5a2fA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.70e-01 | 92.4% | 69.6% |
| 1jw3A00 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.52 | 42.0 | 3.85e-01 | 88.6% | 100.0% |
| 1eq6A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.51 | 43.0 | 3.55e-01 | 91.4% | 63.5% |
| 3r8jA00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.51 | 34.0 | 2.92e-01 | 76.2% | 39.4% |
| 1jeyA02 | 2.40.290.10 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › | 0.51 | 44.0 | 4.23e-01 | 100.0% | 93.7% |
| 1uw4A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 34.0 | 3.63e-01 | 91.4% | 79.1% |
ECOD (87)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3980535 | 1.1.13.51 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU | 0.73 | 68.0 | 6.20e-01 | 100.0% | 89.6% |
| 4952629 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.73 | 62.0 | 6.37e-01 | 100.0% | 96.0% |
| 3944239 | 1.1.13.51 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU | 0.72 | 64.0 | 6.48e-01 | 100.0% | 97.1% |
| 4952429 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.71 | 61.0 | 6.22e-01 | 100.0% | 96.0% |
| 3164699 | 1.1.13.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N | 0.70 | 65.0 | 6.34e-01 | 100.0% | 97.4% |
| 4059301 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.70 | 65.0 | 6.43e-01 | 100.0% | 98.2% |
| 3587074 | 1.1.13.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N | 0.67 | 60.0 | 5.99e-01 | 100.0% | 94.5% |
| 3943681 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.66 | 60.0 | 5.34e-01 | 100.0% | 95.3% |
| 5007131 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.65 | 44.0 | 4.57e-01 | 98.1% | 74.7% |
| 3457753 | 304.8.1.66 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 | 0.64 | 45.0 | 4.48e-01 | 92.4% | 69.1% |
| None | — | 0.64 | 50.0 | 5.13e-01 | 100.0% | 86.0% | |
| 4319057 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.64 | 48.0 | 4.69e-01 | 100.0% | 73.0% |
| 3587262 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.63 | 57.0 | 5.74e-01 | 100.0% | 99.0% |
| 3909822 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 53.0 | 5.29e-01 | 97.1% | 87.3% |
| 5040464 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 42.0 | 4.36e-01 | 98.1% | 74.7% |
| 3965192 | 1.1.13.67 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2460 | 0.63 | 56.0 | 5.50e-01 | 98.1% | 99.1% |
| 3991601 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.62 | 47.0 | 4.10e-01 | 98.1% | 52.8% |
| 4191050 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.62 | 44.0 | 4.29e-01 | 73.3% | 99.1% |
| 4587424 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.62 | 45.0 | 3.55e-01 | 100.0% | 36.4% |
| 3517994 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.61 | 44.0 | 4.43e-01 | 74.3% | 99.0% |
| 2128076 | 310.3.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilO | 0.61 | 49.0 | 4.40e-01 | 100.0% | 63.1% |
| 4062509 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.61 | 44.0 | 4.43e-01 | 97.1% | 75.2% |
| 3943282 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.61 | 47.0 | 4.55e-01 | 100.0% | 73.3% |
| 2471637 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.61 | 54.0 | 4.84e-01 | 100.0% | 88.6% |
| 3678951 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.61 | 49.0 | 3.78e-01 | 86.7% | 55.7% |
| 3224621 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.60 | 36.0 | 4.15e-01 | 76.2% | 82.7% |
| 3412875 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.60 | 43.0 | 4.36e-01 | 74.3% | 93.3% |
| 1824495 | 2484.1.1.61 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PilM_2 | 0.60 | 38.0 | 3.22e-01 | 75.2% | 37.0% |
| 4323756 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.60 | 43.0 | 3.93e-01 | 73.3% | 99.3% |
| 3973696 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 43.0 | 4.08e-01 | 97.1% | 62.4% |
| 3501988 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.60 | 49.0 | 3.70e-01 | 88.6% | 54.6% |
| 3472247 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.60 | 50.0 | 3.61e-01 | 91.4% | 42.6% |
| 2832216 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.60 | 53.0 | 4.74e-01 | 100.0% | 90.2% |
| 3801974 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.60 | 43.0 | 4.26e-01 | 74.3% | 93.6% |
| 4401956 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.60 | 38.0 | 4.03e-01 | 72.4% | 71.6% |
| 4943359 | 304.102.1.13 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 | 0.60 | 48.0 | 3.70e-01 | 86.7% | 40.0% |
| 4366827 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.59 | 48.0 | 3.70e-01 | 86.7% | 56.2% |
| 3595076 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.59 | 48.0 | 3.56e-01 | 86.7% | 35.6% |
| 5036917 | 304.102.1.13 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 | 0.59 | 47.0 | 4.23e-01 | 85.7% | 62.0% |
| 3710599 | 304.102.1.5 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 | 0.59 | 47.0 | 3.55e-01 | 86.7% | 35.6% |
| 5019301 | 304.102.1.13 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 | 0.59 | 48.0 | 3.65e-01 | 87.6% | 38.4% |
| 3428351 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.59 | 49.0 | 3.98e-01 | 90.5% | 48.2% |
| 4376759 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.59 | 49.0 | 3.81e-01 | 91.4% | 58.3% |
| 4275176 | 304.102.1.5 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 | 0.59 | 47.0 | 3.66e-01 | 85.7% | 40.4% |
| 4074228 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.59 | 49.0 | 3.68e-01 | 92.4% | 81.1% |
| 4557453 | 304.102.1.9 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N, DKCLD, TruB_C_2, Pus10_C | 0.59 | 47.0 | 3.62e-01 | 86.7% | 38.4% |
| 4617847 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.59 | 47.0 | 3.70e-01 | 87.6% | 57.8% |
| 197096 | 310.3.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilO | 0.59 | 46.0 | 4.21e-01 | 100.0% | 64.4% |
| 5082575 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.59 | 41.0 | 4.61e-01 | 92.4% | 96.2% |
| 5001314 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.58 | 47.0 | 3.60e-01 | 86.7% | 38.4% |
| 3807657 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.58 | 48.0 | 3.66e-01 | 89.5% | 53.2% |
| 3924288 | 223.1.1.29 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 | 0.58 | 42.0 | 3.63e-01 | 74.3% | 68.1% |
| 5000301 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.58 | 41.0 | 4.03e-01 | 73.3% | 100.0% |
| 4057590 | 1.1.5.86 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 | 0.58 | 46.0 | 4.25e-01 | 100.0% | 65.0% |
| 5058386 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.58 | 46.0 | 3.84e-01 | 86.7% | 50.0% |
| 4513514 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.58 | 40.0 | 3.79e-01 | 71.4% | 100.0% |
| 4977974 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.58 | 40.0 | 3.77e-01 | 72.4% | 73.8% |
| 3183073 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.57 | 51.0 | 3.82e-01 | 100.0% | 50.7% |
| 4273561 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.57 | 44.0 | 4.07e-01 | 97.1% | 63.7% |
| 3737377 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.57 | 39.0 | 4.41e-01 | 73.3% | 97.3% |
| 4077036 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.57 | 45.0 | 3.56e-01 | 85.7% | 41.3% |
| 3339622 | 2003.1.5.342 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TYW2_N_2 | 0.56 | 44.0 | 3.39e-01 | 82.9% | 48.7% |
| 4029996 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.56 | 47.0 | 3.37e-01 | 91.4% | 46.9% |
| 3473278 | 309.1.2.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain | 0.56 | 50.0 | 3.88e-01 | 100.0% | 75.4% |
| 4034134 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.56 | 49.0 | 4.67e-01 | 97.1% | 93.6% |
| 3602499 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.56 | 50.0 | 4.69e-01 | 100.0% | 84.6% |
| 3741293 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.56 | 47.0 | 3.24e-01 | 91.4% | 51.1% |
| 3585375 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.55 | 46.0 | 3.24e-01 | 91.4% | 44.0% |
| 5027270 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.55 | 50.0 | 4.22e-01 | 100.0% | 73.1% |
| 1900401 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.55 | 44.0 | 3.63e-01 | 85.7% | 77.1% |
| 3250758 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.55 | 46.0 | 3.20e-01 | 91.4% | 44.1% |
| 5074961 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.55 | 39.0 | 3.69e-01 | 74.3% | 78.5% |
| 1018857 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.55 | 45.0 | 3.30e-01 | 91.4% | 46.0% |
| 4988254 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.54 | 48.0 | 4.05e-01 | 100.0% | 68.3% |
| 3279708 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.53 | 38.0 | 3.71e-01 | 74.3% | 74.8% |
| 4246133 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.53 | 41.0 | 4.27e-01 | 81.9% | 94.7% |
| 3276748 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.53 | 44.0 | 3.12e-01 | 91.4% | 45.4% |
| 3710176 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 45.0 | 3.13e-01 | 92.4% | 53.5% |
| 4969811 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.52 | 42.0 | 3.13e-01 | 89.5% | 51.9% |
| 2800329 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.52 | 37.0 | 3.86e-01 | 75.2% | 90.7% |
| 3934347 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 3.93e-01 | 92.4% | 76.5% |
| 3992487 | 11.1.1.1178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DB, Ig_3 | 0.51 | 39.0 | 2.87e-01 | 92.4% | 27.7% |
| 3170424 | 319.1.1.19 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29696 | 0.51 | 40.0 | 4.27e-01 | 91.4% | 98.9% |
| 5000641 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.51 | 41.0 | 3.12e-01 | 88.6% | 75.5% |
| 3695697 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 42.0 | 3.15e-01 | 88.6% | 76.5% |
| 3781073 | 223.2.1.29 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 | 0.50 | 36.0 | 3.31e-01 | 74.3% | 67.9% |
| 3495780 | 304.107.1.5 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BCS1_N | 0.50 | 36.0 | 3.22e-01 | 76.2% | 73.5% |
D2
medium
residues 128-369
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.58 | 16.0 | 3.07e-01 | 83.5% | 83.1% |
| 3f8xB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 29.0 | 3.85e-01 | 89.7% | 95.5% |
| 4o8sA01 | 3.10.450.620 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain | 0.53 | 23.0 | 3.19e-01 | 90.1% | 78.4% |
| 3ci0K01 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.52 | 22.0 | 3.25e-01 | 80.6% | 87.5% |
| 2cm4A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 24.0 | 2.97e-01 | 71.5% | 69.0% |