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IMGVR_UViG_3300000915_000001-3300000915-JGI12329J12844_100007411

Arc-Vir

IMGVR_UViG_3300000915_000001-3300000915-JGI12329J12844_100007411

Identity

Kingdom:
archaea

Quality

84.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-65
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.71 44.0 4.22e-01 91.8% 54.4%
7dkaA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.64 52.0 3.61e-01 98.0% 34.9%
2ctoA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.62 50.0 4.77e-01 95.9% 93.4%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.61 48.0 4.20e-01 89.8% 88.6%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.61 46.0 4.61e-01 89.8% 100.0%
2crjA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.60 46.0 3.94e-01 91.8% 58.7%
2p67A01 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 38.0 3.80e-01 81.6% 61.5%
5zr4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 3.77e-01 98.0% 59.8%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 4.12e-01 91.8% 76.4%
2k9lA00 1.10.10.1330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain 0.55 44.0 3.94e-01 95.9% 88.2%
1f81A00 1.20.1020.10 Mainly Alpha › Up-down Bundle › CREB-binding Protein; Chain A › TAZ domain 0.54 41.0 3.42e-01 81.6% 70.1%
2g80A02 1.10.720.60 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.53 40.0 3.59e-01 91.8% 97.4%
7xk2R01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 46.0 2.88e-01 100.0% 34.3%
2l7kA00 1.10.10.1850 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sporulation protein-like 0.50 38.0 3.41e-01 85.7% 55.3%
1isiA01 1.20.82.10 Mainly Alpha › Up-down Bundle › ADP Ribosyl Cyclase; Chain A, domain 1 › ADP Ribosyl Cyclase; Chain A, domain 1 0.50 40.0 3.07e-01 91.8% 73.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3612295 7532.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › Phosphoglycerate kinase domain 1 › PGK 0.79 66.0 4.16e-01 95.9% 20.8%
3623703 7579.1.1.89 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE 0.77 67.0 3.76e-01 100.0% 24.0%
4118420 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.74 51.0 4.70e-01 73.5% 89.2%
3994526 7579.1.1.1 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase 0.74 63.0 3.58e-01 100.0% 24.1%
3926085 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.72 50.0 3.97e-01 73.5% 69.0%
3501989 4143.1.1.0 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like 0.70 58.0 4.20e-01 95.9% 70.7%
4145892 3949.1.1.2 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › DUF3603 0.66 55.0 4.60e-01 95.9% 65.6%
3570625 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.63 51.0 4.12e-01 95.9% 47.8%
3633868 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.63 54.0 4.90e-01 100.0% 72.5%
4926808 842.1.1.1 ↗ a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.61 53.0 3.49e-01 100.0% 23.2%
3410150 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.60 49.0 4.86e-01 100.0% 89.1%
5000849 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 42.0 3.74e-01 77.6% 62.9%
5007230 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.57 48.0 3.28e-01 100.0% 41.0%
4061395 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.56 42.0 3.86e-01 91.8% 64.0%
5055984 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 45.0 3.40e-01 100.0% 72.6%
3592580 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.54 40.0 3.92e-01 91.8% 75.0%
4137751 102.1.1.24 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.53 40.0 3.45e-01 93.9% 94.7%
3613014 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.52 42.0 3.55e-01 98.0% 79.6%