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IMGVR_UViG_3300001073_000001-3300001073-C687J13245_10000131

Arc-Vir

IMGVR_UViG_3300001073_000001-3300001073-C687J13245_10000131

Quality

87.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 88-121
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pptA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.75 59.0 5.83e-01 100.0% 81.1%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.74 50.0 4.82e-01 79.4% 59.0%
1y0nA00 1.10.10.610 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › YehU-like 0.74 50.0 3.99e-01 79.4% 33.8%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 61.0 5.03e-01 100.0% 66.7%
3p2aA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.71 56.0 5.52e-01 97.1% 86.1%
3rhtA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.69 48.0 2.87e-01 76.5% 9.9%
3k1rA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.68 49.0 3.46e-01 79.4% 55.9%
7sbeA01 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.68 47.0 2.90e-01 76.5% 11.7%
1ciaA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.66 54.0 3.37e-01 100.0% 33.8%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.65 46.0 3.78e-01 82.4% 91.8%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 46.0 4.09e-01 79.4% 60.0%
2ostD00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.65 49.0 3.51e-01 100.0% 33.8%
5yvxA00 3.30.40.100 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.65 52.0 4.47e-01 97.1% 70.0%
3nt7A00 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.62 48.0 3.04e-01 100.0% 24.0%
4bs9A04 3.30.40.250 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.60 40.0 3.14e-01 70.6% 98.9%
7uqyB01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.60 47.0 3.00e-01 100.0% 52.8%
1rmdA02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.59 41.0 4.24e-01 85.3% 90.0%
8hnzA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 48.0 2.76e-01 100.0% 66.7%
2wfbA00 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.58 41.0 3.00e-01 85.3% 35.0%
4frfA00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.58 44.0 2.83e-01 97.1% 36.9%
1ae9A00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.58 44.0 2.98e-01 100.0% 63.2%
4q7qB00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.58 41.0 2.51e-01 85.3% 10.1%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.58 41.0 3.72e-01 88.2% 57.9%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 44.0 3.89e-01 100.0% 67.2%
2xocA01 3.30.40.140 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.58 43.0 3.58e-01 97.1% 57.7%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.57 42.0 2.74e-01 100.0% 16.0%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 38.0 3.08e-01 76.5% 30.3%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.57 39.0 2.98e-01 76.5% 83.0%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 46.0 3.25e-01 100.0% 36.9%
2ezvA02 2.40.50.610 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Type II restriction enzyme SfiI, DNA-recognition domain 0.56 38.0 3.17e-01 73.5% 100.0%
1d7bA00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.56 42.0 2.80e-01 97.1% 63.8%
4nnaA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 38.0 2.20e-01 73.5% 16.7%
4yg6B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 2.66e-01 91.2% 90.8%
4c1sA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.53 36.0 2.15e-01 82.4% 20.0%
1kkhA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.53 39.0 2.69e-01 94.1% 18.8%
4pk9A00 3.40.1090.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain 0.52 37.0 2.24e-01 94.1% 38.7%
3zdrA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 35.0 2.30e-01 73.5% 61.7%
2jl8102 3.30.160.850 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 36.0 3.57e-01 100.0% 93.3%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 42.0 2.56e-01 100.0% 39.8%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 37.0 2.57e-01 91.2% 71.7%
2bm0A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.51 42.0 3.79e-01 100.0% 88.2%
2mknA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.50 35.0 3.43e-01 94.1% 63.6%
4p1mB01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.50 35.0 3.47e-01 85.3% 73.3%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4883095 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.78 57.0 6.01e-01 79.4% 100.0%
4960538 375.10.1.0 few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.77 61.0 5.18e-01 97.1% 53.3%
5065789 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 59.0 5.66e-01 100.0% 75.0%
3570056 198.1.1.4 alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.76 52.0 3.78e-01 70.6% 31.8%
1842540 375.1.1.65 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Thio2_N 0.76 59.0 5.55e-01 100.0% 69.8%
3254029 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.75 58.0 4.23e-01 94.1% 31.6%
3438998 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 58.0 5.79e-01 100.0% 85.7%
3921494 376.1.3.6 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-CW 0.75 65.0 5.74e-01 100.0% 80.0%
3843756 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.71 53.0 3.84e-01 88.2% 29.5%
3706365 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 59.0 5.22e-01 97.1% 90.0%
3862499 192.29.1.117 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Ima1_N 0.70 54.0 4.74e-01 100.0% 56.4%
3711290 375.10.1.0 few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.70 52.0 4.49e-01 100.0% 50.0%
3230715 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 52.0 4.60e-01 97.1% 54.0%
3486337 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 54.0 4.74e-01 100.0% 56.4%
3788802 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 47.0 3.04e-01 70.6% 15.2%
3260588 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 55.0 5.04e-01 100.0% 76.0%
3740227 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.68 47.0 3.91e-01 79.4% 37.1%
4039724 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.68 57.0 4.73e-01 100.0% 66.2%
3598294 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.67 56.0 3.89e-01 100.0% 41.6%
3213903 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 57.0 4.14e-01 100.0% 34.7%
4028035 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.67 47.0 4.68e-01 97.1% 74.3%
5041606 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 51.0 4.34e-01 94.1% 73.8%
3362593 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.65 48.0 3.43e-01 85.3% 27.4%
4061693 101.28.1.1 alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins › FlhC 0.65 47.0 3.42e-01 100.0% 25.2%
3506749 633.21.1.23 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 0.65 44.0 2.87e-01 70.6% 17.6%
3337279 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 49.0 4.93e-01 97.1% 85.7%
4059146 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.63 52.0 4.35e-01 100.0% 66.2%
3471310 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 42.0 4.04e-01 100.0% 60.0%
3596234 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 50.0 4.86e-01 100.0% 82.5%
3234686 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.62 43.0 2.50e-01 70.6% 7.9%
3697444 2004.1.1.186 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 0.62 51.0 3.09e-01 97.1% 72.2%
4010021 375.1.1.287 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YnfU 0.61 48.0 4.71e-01 100.0% 85.0%
3937186 221.4.1.21 a+b two layers › beta-Grasp › Nudix › Nudix › PF30669 0.61 46.0 2.73e-01 85.3% 16.6%
5024386 2484.4.1.0 mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like 0.60 43.0 3.31e-01 85.3% 41.0%
4957686 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.60 41.0 3.33e-01 82.4% 32.5%
4148130 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.60 40.0 3.54e-01 70.6% 50.9%
3633569 101.1.8.10 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3435 0.59 41.0 3.03e-01 100.0% 26.0%
3208633 2004.1.1.768 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_12, AAA_19 0.59 48.0 2.59e-01 100.0% 4.1%
5075702 4050.1.1.0 few secondary structure elements › beta-barrel domain in Capz › beta-barrel domain in Capz › beta-barrel domain in Capz 0.59 48.0 4.26e-01 100.0% 76.4%
1291820 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.59 41.0 2.50e-01 85.3% 10.0%
3707100 2004.1.1.364 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C 0.58 40.0 2.23e-01 76.5% 4.4%
3614778 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 43.0 2.79e-01 79.4% 17.4%
5062565 177.1.1.1 alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Zn_dep_PLPC 0.57 40.0 2.46e-01 85.3% 21.0%
3639642 2004.1.1.186 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 0.56 44.0 2.74e-01 94.1% 76.2%
3464671 4.1.1.136 beta barrels › SH3 › SH3 › SH3 › NMD_SH3 0.56 39.0 3.39e-01 79.4% 38.6%
3992658 5.1.4.149 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR54 0.55 42.0 2.70e-01 100.0% 28.2%
3440533 2.1.1.27 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rpb8 0.55 44.0 3.36e-01 100.0% 36.7%
4614874 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.55 38.0 3.53e-01 76.5% 47.3%
3483289 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 38.0 3.40e-01 79.4% 41.5%
4507562 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.55 41.0 3.56e-01 70.6% 47.3%
4234747 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.55 38.0 3.30e-01 73.5% 48.3%
3597906 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.54 38.0 2.45e-01 88.2% 23.7%
3801752 375.1.1.269 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF29332 0.54 38.0 3.64e-01 94.1% 88.0%
4065083 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.54 38.0 3.46e-01 76.5% 47.3%
4940877 377.1.1.130 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf_Tbcl_2 0.53 38.0 3.87e-01 97.1% 85.7%
3867927 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 41.0 2.78e-01 88.2% 41.4%
4180555 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.52 37.0 3.37e-01 76.5% 45.5%
3572045 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 41.0 2.52e-01 88.2% 24.4%
4999237 301.2.1.0 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like 0.52 35.0 2.26e-01 76.5% 11.1%
3602060 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 37.0 2.44e-01 97.1% 14.9%
4366971 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.51 37.0 3.31e-01 76.5% 47.3%
1787990 2003.1.2.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.51 34.0 2.40e-01 82.4% 40.4%
3391334 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 36.0 3.60e-01 82.4% 67.5%
1314126 857.1.1.1 a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA 0.50 35.0 2.77e-01 85.3% 30.8%