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IMGVR_UViG_3300001073_000001-3300001073-C687J13245_10000154

Arc-Vir

IMGVR_UViG_3300001073_000001-3300001073-C687J13245_10000154

Quality

91.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-40
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.73 57.0 4.71e-01 92.1% 82.4%
2d44A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.73 61.0 3.57e-01 100.0% 18.1%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.72 58.0 5.61e-01 94.7% 97.8%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.72 57.0 4.86e-01 92.1% 88.1%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.70 57.0 4.96e-01 100.0% 77.3%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.70 56.0 5.18e-01 100.0% 96.4%
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.69 54.0 4.11e-01 92.1% 39.4%
1u8sA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.69 54.0 4.31e-01 94.7% 95.3%
1j0hA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.69 58.0 4.52e-01 97.4% 45.8%
4x9xA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.68 55.0 3.81e-01 100.0% 53.0%
2yfoA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.68 53.0 4.01e-01 89.5% 44.8%
2junA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.67 48.0 3.63e-01 86.8% 30.7%
3a21A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 53.0 4.11e-01 94.7% 41.8%
2jfdA03 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.66 50.0 4.46e-01 94.7% 98.5%
1pzxA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.65 47.0 4.78e-01 86.8% 100.0%
1aw8B00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.65 54.0 4.24e-01 100.0% 54.9%
4e2oA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 53.0 4.17e-01 97.4% 44.3%
4ba0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 49.0 4.57e-01 86.8% 68.6%
3ir9A02 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.65 55.0 3.92e-01 100.0% 36.7%
3vk6A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 51.0 4.56e-01 94.7% 76.3%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 51.0 3.78e-01 100.0% 32.2%
5trbA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 52.0 4.35e-01 94.7% 68.1%
2apoB00 2.20.28.40 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › H/ACA ribonucleoprotein complex, subunit Nop10 0.63 44.0 4.05e-01 92.1% 54.5%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.62 51.0 4.20e-01 100.0% 66.7%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.62 47.0 4.32e-01 92.1% 64.9%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 46.0 3.87e-01 92.1% 95.1%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.62 45.0 4.10e-01 94.7% 66.2%
1xa3A02 3.30.1540.10 Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › formyl-coa transferase, domain 3 0.62 52.0 3.88e-01 97.4% 81.6%
5hkxA04 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 46.0 4.47e-01 86.8% 95.5%
2f4eB00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.61 50.0 3.59e-01 100.0% 66.9%
4dipH00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.61 50.0 3.64e-01 100.0% 69.7%
3r5dA02 3.30.60.70 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Trimeric LpxA-like enzymes 0.60 47.0 4.67e-01 100.0% 87.8%
5t17A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.60 49.0 3.94e-01 100.0% 44.7%
2pn5A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 3.70e-01 100.0% 48.9%
2wcyA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.57 42.0 3.70e-01 97.4% 49.3%
4qglA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 44.0 2.84e-01 86.8% 20.7%
2yuxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.22e-01 100.0% 39.8%
1lvmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 40.0 3.19e-01 100.0% 40.6%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.54 47.0 3.29e-01 100.0% 45.1%
2levA00 4.10.430.10 Few Secondary Structures › Irregular › H-NS DNA Binding Protein › Histone-like protein H-NS, C-terminal domain 0.54 41.0 3.83e-01 97.4% 75.4%
2i4lA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 40.0 2.44e-01 97.4% 18.5%
3kalB05 3.30.1490.50 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain 0.53 42.0 3.82e-01 100.0% 69.5%
3c0fB00 3.30.1490.340 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.52 38.0 3.17e-01 89.5% 67.1%
7zdtD02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 35.0 2.28e-01 76.3% 64.8%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3708288 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 61.0 6.28e-01 92.1% 91.4%
3596630 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 58.0 5.98e-01 89.5% 88.6%
3574854 375.1.1.267 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Mcm10, zf-CCCH_Mcm10 0.78 60.0 4.63e-01 92.1% 37.6%
3480425 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 58.0 5.99e-01 92.1% 91.4%
3221968 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.76 63.0 5.83e-01 97.4% 74.0%
119248 375.1.1.146 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CCCH_Mcm10 0.75 57.0 5.60e-01 97.4% 78.6%
3885453 386.1.1.257 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_Z280C_D 0.75 58.0 5.82e-01 94.7% 95.0%
3486285 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.74 60.0 5.02e-01 100.0% 56.0%
3576729 375.1.1.146 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CCCH_Mcm10 0.73 59.0 5.23e-01 97.4% 61.8%
3233799 375.1.1.146 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CCCH_Mcm10 0.73 57.0 5.71e-01 97.4% 85.0%
3627027 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 58.0 5.74e-01 97.4% 85.0%
4457666 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.73 59.0 4.71e-01 94.7% 76.2%
3675525 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.73 59.0 5.01e-01 94.7% 64.7%
3743425 5050.1.1.32 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.72 56.0 3.22e-01 100.0% 9.0%
3524127 192.29.1.198 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › zf-B_box 0.72 57.0 3.61e-01 92.1% 17.9%
3529691 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.72 54.0 5.23e-01 86.8% 73.3%
3930374 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.71 57.0 4.47e-01 97.4% 52.2%
3483496 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.71 57.0 5.51e-01 94.7% 91.1%
3992020 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.71 55.0 5.24e-01 94.7% 90.0%
3470859 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.70 56.0 4.53e-01 94.7% 53.8%
4324324 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.70 56.0 4.40e-01 97.4% 51.1%
3750234 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 55.0 5.36e-01 97.4% 100.0%
3859106 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 54.0 5.22e-01 94.7% 100.0%
4520162 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.69 52.0 4.38e-01 92.1% 80.0%
3349728 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 54.0 4.91e-01 92.1% 100.0%
3845539 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 53.0 4.26e-01 100.0% 58.9%
4415076 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.67 54.0 3.22e-01 94.7% 11.7%
3920052 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 53.0 3.78e-01 97.4% 43.1%
3407954 386.1.1.24 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_4 0.66 52.0 4.17e-01 100.0% 96.7%
4016528 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 50.0 4.05e-01 92.1% 64.7%
3400187 376.1.1.5 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.65 49.0 3.76e-01 94.7% 32.7%
3853799 386.1.1.290 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451_C 0.65 52.0 4.38e-01 100.0% 90.7%
3895783 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.65 50.0 4.63e-01 86.8% 72.0%
3213903 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 50.0 3.96e-01 97.4% 45.3%
3397134 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.65 54.0 4.98e-01 97.4% 78.0%
3388590 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.64 49.0 4.41e-01 92.1% 66.7%
4469129 301.9.1.1 a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.64 53.0 3.86e-01 100.0% 61.7%
4456198 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 52.0 3.41e-01 97.4% 22.7%
5034201 375.10.1.2 few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE 0.63 50.0 3.54e-01 94.7% 26.9%
3890045 904.1.1.3 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › ANCHR-like_BBOX 0.63 48.0 4.64e-01 89.5% 80.0%
3458535 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.63 43.0 4.49e-01 76.3% 100.0%
4143708 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 48.0 4.31e-01 92.1% 98.3%
5063434 375.1.1.48 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF35_N 0.62 51.0 4.89e-01 97.4% 82.2%
153859 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.62 47.0 4.32e-01 92.1% 64.9%
4607892 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 54.0 5.32e-01 100.0% 100.0%
4116298 375.10.1.0 few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.62 48.0 3.46e-01 94.7% 26.9%
4139949 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.62 46.0 4.66e-01 92.1% 92.5%
3568772 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 48.0 4.36e-01 97.4% 95.0%
3877714 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.62 44.0 3.76e-01 89.5% 48.8%
4451053 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.61 47.0 4.44e-01 92.1% 72.0%
4933086 375.1.1.181 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PALP 0.60 50.0 3.59e-01 97.4% 49.2%
3272887 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 48.0 3.42e-01 97.4% 71.1%
5080684 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.59 46.0 3.20e-01 94.7% 24.5%
1734768 4187.1.1.1 a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB 0.59 43.0 4.02e-01 94.7% 69.0%
3413459 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.58 43.0 4.23e-01 97.4% 75.5%
3861316 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.58 46.0 4.28e-01 94.7% 66.7%
3885980 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.58 42.0 4.18e-01 97.4% 77.8%
3389045 379.1.1.1 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.58 44.0 4.24e-01 97.4% 74.0%
5082510 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 44.0 4.39e-01 94.7% 95.0%
5082704 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.56 43.0 2.89e-01 97.4% 20.0%
3619257 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 33.0 2.50e-01 100.0% 22.7%