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IMGVR_UViG_3300001136_000010-3300001136-JGI1684J13235_100042318
Arc-VirIMGVR_UViG_3300001136_000010-3300001136-JGI1684J13235_100042318
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 88-143
Domain cluster:
rep: IMGVR_UViG_3300011185_000289-3300011185-Ga0136597_10030371__D1-48
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4k0dA00 | 1.20.120.1730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.85 | 58.0 | 4.23e-01 | 71.4% | 28.0% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.83 | 57.0 | 4.88e-01 | 71.4% | 92.9% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.81 | 55.0 | 5.10e-01 | 71.4% | 56.3% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.80 | 60.0 | 4.65e-01 | 80.4% | 49.1% |
| 7zmgL01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.77 | 58.0 | 5.14e-01 | 80.4% | 65.0% |
| 5czlA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.74 | 65.0 | 3.98e-01 | 94.6% | 31.4% |
| 1u8vA01 | 1.10.3140.10 | Mainly Alpha › Orthogonal Bundle › 4-hydroxybutyryl-coa dehydratase, domain 1 › 4-hydroxybutyryl-coa dehydratase, domain 1 | 0.60 | 50.0 | 3.86e-01 | 100.0% | 79.7% |
| 1a87A02 | 1.10.490.30 | Mainly Alpha › Orthogonal Bundle › Globin-like › Colicin | 0.56 | 49.0 | 3.39e-01 | 100.0% | 59.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002089 | 2004.1.1.144 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD_2 | 0.95 | 66.0 | 3.94e-01 | 71.4% | 12.7% |
| 5006528 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.89 | 61.0 | 5.47e-01 | 71.4% | 53.3% |
| 3265477 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.87 | 60.0 | 3.87e-01 | 71.4% | 18.2% |
| 3199341 | 192.8.1.32 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Pkr1 | 0.86 | 63.0 | 5.62e-01 | 76.8% | 68.0% |
| 5069780 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.85 | 58.0 | 4.82e-01 | 71.4% | 42.1% |
| 5016553 | 159.1.2.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related | 0.85 | 65.0 | 5.38e-01 | 100.0% | 48.4% |
| 3968516 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.80 | 55.0 | 4.96e-01 | 71.4% | 58.7% |
| 4089247 | 3843.1.1.1 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 | 0.79 | 59.0 | 4.94e-01 | 80.4% | 53.7% |
| 4882418 | 208.1.1.55 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Oxidored_q2 | 0.79 | 60.0 | 5.07e-01 | 80.4% | 62.5% |
| 4973412 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.73 | 60.0 | 5.37e-01 | 87.5% | 81.3% |
| 4653158 | 1107.1.1.1 ↗ | alpha bundles › Pilin › Pilin › Pilin › TraA | 0.71 | 49.0 | 4.72e-01 | 73.2% | 67.2% |
D2
medium
residues 5-59
Domain cluster:
representative