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IMGVR_UViG_3300001322_000001-3300001322-A2665W6_1000028
Arc-VirIMGVR_UViG_3300001322_000001-3300001322-A2665W6_1000028
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 163-290_322-333
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dktA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.78 | 52.0 | 6.14e-01 | 98.6% | 98.9% |
| 2e0zC03 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.76 | 51.0 | 6.10e-01 | 97.9% | 100.0% |
| 5b3pA00 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.60 | 33.0 | 3.40e-01 | 100.0% | 55.2% |
| 1uhzA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 26.0 | 3.14e-01 | 90.0% | 62.9% |
| 2iafA00 | 3.30.1330.90 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 | 0.57 | 46.0 | 4.69e-01 | 93.6% | 89.3% |
| 3v4dB00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.52 | 39.0 | 4.11e-01 | 95.0% | 88.8% |
| 3ubfA03 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.51 | 34.0 | 3.87e-01 | 98.6% | 93.1% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5041371 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.71 | 67.0 | 5.05e-01 | 100.0% | 53.2% |
| 5081487 | 2485.3.1.10 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 | 0.70 | 65.0 | 5.14e-01 | 100.0% | 62.3% |
| 4954548 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.69 | 64.0 | 5.05e-01 | 100.0% | 57.8% |
| 2724409 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.62 | 57.0 | 4.54e-01 | 99.3% | 51.3% |
| 3444162 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.61 | 35.0 | 4.25e-01 | 92.9% | 86.7% |
| 4079005 | 298.4.1.6 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › T3SS_SCTL | 0.60 | 39.0 | 4.10e-01 | 93.6% | 72.0% |
| 4969719 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.60 | 32.0 | 3.20e-01 | 100.0% | 48.7% |
| 4025055 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.53 | 34.0 | 3.99e-01 | 84.3% | 95.8% |
| 3930486 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.53 | 36.0 | 4.11e-01 | 98.6% | 96.0% |
| 3880995 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.53 | 37.0 | 4.09e-01 | 98.6% | 88.7% |
| 4235198 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.53 | 32.0 | 3.75e-01 | 77.9% | 88.4% |
| 3738410 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 38.0 | 3.57e-01 | 75.7% | 61.2% |
| 3842153 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 37.0 | 3.93e-01 | 98.6% | 87.5% |
| 3397221 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 35.0 | 3.92e-01 | 98.6% | 91.8% |
D2
medium
residues 34-54_84-95_117-162
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2i06A01 | 3.50.14.10 | Alpha Beta › 3-Layer(bba) Sandwich › Replication Terminator Protein (Tus); Chain A, domain 1 › Replication terminator Tus, domain 1 superfamily/Replication terminator Tus | 0.52 | 39.0 | 2.81e-01 | 77.2% | 50.9% |
| 4mh4A02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.52 | 33.0 | 3.14e-01 | 79.7% | 53.2% |
| 2bjoA02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.51 | 32.0 | 3.10e-01 | 79.7% | 54.3% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3730197 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.56 | 32.0 | 3.07e-01 | 74.7% | 48.9% |
| 3592961 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.53 | 35.0 | 3.23e-01 | 74.7% | 51.0% |